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Aaron M Newman
Aaron M Newman
Assistant Professor of Biomedical Data Science, Stanford University
Verified email at stanford.edu - Homepage
Title
Cited by
Cited by
Year
Robust enumeration of cell subsets from tissue expression profiles
AM Newman, CL Liu, MR Green, AJ Gentles, W Feng, Y Xu, CD Hoang, ...
Nature Methods 12 (5), 453-457, 2015
92652015
The immune landscape of cancer
V Thorsson, DL Gibbs, SD Brown, D Wolf, DS Bortone, THO Yang, ...
Immunity 48 (4), 812-830. e14, 2018
44712018
The prognostic landscape of genes and infiltrating immune cells across human cancers
AJ Gentles*, AM Newman*(Co-First), CL Liu, SV Bratman, W Feng, D Kim, ...
Nature Medicine, 2015
28312015
Determining cell type abundance and expression from bulk tissues with digital cytometry
AM Newman, CB Steen, CL Liu, AJ Gentles, AA Chaudhuri, F Scherer, ...
Nature biotechnology 37 (7), 773-782, 2019
27022019
Profiling Tumor Infiltrating Immune Cells with CIBERSORT
B Chen, MS Khodadoust, CL Liu, AM Newman*(Co-Corresponding), ...
Cancer Systems Biology, 243-259, 2018
23092018
An ultrasensitive method for quantitating circulating tumor DNA with broad patient coverage
AM Newman, SV Bratman, J To, JF Wynne, NCW Eclov, LA Modlin, ...
Nature Medicine, 2014
22272014
Integrated digital error suppression for improved detection of circulating tumor DNA
AM Newman, AF Lovejoy, DM Klass, DM Kurtz, JJ Chabon, F Scherer, ...
Nature biotechnology 34 (5), 547, 2016
10702016
Early detection of molecular residual disease in localized lung cancer by circulating tumor DNA profiling
AA Chaudhuri, JJ Chabon, AF Lovejoy, AM Newman, H Stehr, TD Azad, ...
Cancer discovery 7 (12), 1394-1403, 2017
7942017
Identification and isolation of a dermal lineage with intrinsic fibrogenic potential
Y Rinkevich, GG Walmsley, MS Hu, ZN Maan, AM Newman, M Drukker, ...
Science 348 (6232), aaa2151, 2015
6542015
Circulating tumour DNA profiling reveals heterogeneity of EGFR inhibitor resistance mechanisms in lung cancer patients.
JJ Chabon, AD Simmons, AF Lovejoy, MS Esfahani, AM Newman, ...
Nature communications 7, 11815, 2016
6212016
Single-cell transcriptional diversity is a hallmark of developmental potential
GS Gulati, SS Sikandar, DJ Wesche, A Manjunath, A Bharadwaj, ...
Science 367 (6476), 405-411, 2020
6122020
clusterMaker: a multi-algorithm clustering plugin for Cytoscape
J Morris*, L Apeltsin*, AM Newman*(Co-First), J Baumbach, T Wittkop, ...
BMC Bioinformatics 12 (1), 436, 2011
6092011
Distinct biological subtypes and patterns of genome evolution in lymphoma revealed by circulating tumor DNA
F Scherer*, DM Kurtz*, AM Newman*(Co-First), H Stehr, AFM Craig, ...
Science Translational Medicine 8 (364), 364ra155-364ra155, 2016
4392016
Circulating Tumor DNA Measurements As Early Outcome Predictors in Diffuse Large B-Cell Lymphoma
DM Kurtz, F Scherer, MC Jin, J Soo, AFM Craig, MS Esfahani, JJ Chabon, ...
Journal of Clinical Oncology, JCO. 2018.78. 5246, 2018
3952018
Early B cell changes predict autoimmunity following combination immune checkpoint blockade
R Das, N Bar, M Ferreira, AM Newman, L Zhang, JK Bailur, A Bacchiocchi, ...
The Journal of clinical investigation 128 (2), 2018
3372018
The genome sequence of the colonial chordate, Botryllus schlosseri
A Voskoboynik, NF Neff, D Sahoo, AM Newman, D Pushkarev, W Koh, ...
eLife 2, 2013
3202013
Profiling Cell Type Abundance and Expression in Bulk Tissues with CIBERSORTx
CB Steen, CL Liu, AA Alizadeh, AM Newman
Stem Cell Transcriptional Networks, 135-157, 2020
3102020
Role of KEAP1/NRF2 and TP53 Mutations in Lung Squamous Cell Carcinoma Development and Radiation Resistance
Y Jeong, NT Hoang, A Lovejoy, H Stehr, AM Newman, AJ Gentles, ...
Cancer Discovery, CD-16-0127, 2016
2822016
Lab-specific gene expression signatures in pluripotent stem cells
AM Newman, JB Cooper
Cell Stem Cell 7 (2), 258-262, 2010
2772010
Systems-level analysis of age-related macular degeneration reveals global biomarkers and phenotype-specific functional networks
AM Newman, NB Gallo, LS Hancox, NJ Miller, CM Radeke, MA Maloney, ...
Genome Medicine 4 (2), 16-16, 2012
2712012
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