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Konrad Scheffler
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Detecting individual sites subject to episodic diversifying selection
B Murrell, JO Wertheim, S Moola, T Weighill, K Scheffler, ...
PLoS genetics 8 (7), e1002764, 2012
17022012
Strelka2: fast and accurate calling of germline and somatic variants
S Kim, K Scheffler, AL Halpern, MA Bekritsky, E Noh, M Källberg, X Chen, ...
Nature methods 15 (8), 591-594, 2018
12482018
FUBAR: a fast, unconstrained bayesian approximation for inferring selection
B Murrell, S Moola, A Mabona, T Weighill, D Sheward, ...
Molecular biology and evolution 30 (5), 1196-1205, 2013
12482013
Less is more: an adaptive branch-site random effects model for efficient detection of episodic diversifying selection
MD Smith, JO Wertheim, S Weaver, B Murrell, K Scheffler, ...
Molecular biology and evolution 32 (5), 1342-1353, 2015
7162015
RELAX: detecting relaxed selection in a phylogenetic framework
JO Wertheim, B Murrell, MD Smith, SL Kosakovsky Pond, K Scheffler
Molecular biology and evolution 32 (3), 820-832, 2015
6312015
Gene-wide identification of episodic selection
B Murrell, S Weaver, MD Smith, JO Wertheim, S Murrell, A Aylward, ...
Molecular biology and evolution 32 (5), 1365-1371, 2015
5622015
A random effects branch-site model for detecting episodic diversifying selection
SL Kosakovsky Pond, B Murrell, M Fourment, SDW Frost, W Delport, ...
Molecular biology and evolution 28 (11), 3033-3043, 2011
4762011
ExpansionHunter: a sequence-graph-based tool to analyze variation in short tandem repeat regions
E Dolzhenko, V Deshpande, F Schlesinger, P Krusche, R Petrovski, ...
Bioinformatics 35 (22), 4754-4756, 2019
2752019
Robust inference of positive selection from recombining coding sequences
K Scheffler, DP Martin, C Seoighe
Bioinformatics 22 (20), 2493-2499, 2006
2352006
Timing the SARS-CoV-2 index case in Hubei province
J Pekar, M Worobey, N Moshiri, K Scheffler, JO Wertheim
Science 372 (6540), 412-417, 2021
2102021
Social and genetic networks of HIV-1 transmission in New York City
JO Wertheim, SL Kosakovsky Pond, LA Forgione, SR Mehta, B Murrell, ...
PLoS pathogens 13 (1), e1006000, 2017
2052017
Automatic learning of dialogue strategy using dialogue simulation and reinforcement learning
K Scheffler, S Young
Proceedings of HLT 2, 0, 2002
2002002
Evolutionary origins of human herpes simplex viruses 1 and 2
JO Wertheim, MD Smith, DM Smith, K Scheffler, SL Kosakovsky Pond
Molecular biology and evolution 31 (9), 2356-2364, 2014
1862014
Corpus-based dialogue simulation for automatic strategy learning and evaluation
K Scheffler, S Young
Proc. NAACL Workshop on Adaptation in Dialogue Systems, 64-70, 2001
1202001
Models of coding sequence evolution
W Delport, K Scheffler, C Seoighe
Briefings in bioinformatics 10 (1), 97-109, 2009
1032009
Kosakovsky Pond SL
JO Wertheim, MD Smith, DM Smith, K Scheffler
Evolutionary origins of human herpes simplex viruses 1, 2356-64, 2011
972011
CodonTest: modeling amino acid substitution preferences in coding sequences
W Delport, K Scheffler, G Botha, MB Gravenor, SV Muse, ...
PLoS computational biology 6 (8), e1000885, 2010
812010
Evolutionary fingerprinting of genes
SL Kosakovsky Pond, K Scheffler, MB Gravenor, AFY Poon, SDW Frost
Molecular biology and evolution 27 (3), 520-536, 2010
772010
Deep sequencing reveals minor protease resistance mutations in patients failing a protease inhibitor regimen
R Fisher, GU van Zyl, SAA Travers, SL Kosakovsky Pond, S Engelbrech, ...
Journal of virology 86 (11), 6231-6237, 2012
682012
Probabilistic simulation of human-machine dialogues
K Scheffler, S Young
2000 IEEE International Conference on Acoustics, Speech, and Signal …, 2000
672000
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Articles 1–20