Konrad Scheffler

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	All	Since 2016
Citations	4798	3087
h-index	28	19
i10-index	43	33

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20042005200620072008200920102011201220132014201520162017201820192020202115 32 38 44 66 86 97 92 141 284 337 410 413 481 530 719 923 21

Co-authors

Sergei L Kosakovsky PondProfessor of Biology, Institute for Genomics and Evolutionary Medicine, Temple UniversityVerified email at temple.edu
Ben MurrellDepartment of Microbiology, Tumor and Cell Biology, Karolinska InstitutetVerified email at ki.se
Joel WertheimUniversity of California San DiegoVerified email at ucsd.edu
Cathal SeoigheNational University of Ireland GalwayVerified email at nuigalway.ie
Davey SmithProfessor of Medicine, University of California, San DiegoVerified email at ucsd.edu
Martin D SmithSoftware Developer, Pacific Biosciences of CaliforniaVerified email at pacificbiosciences.com
Steve YoungProfessor of Information EngineeringVerified email at eng.cam.ac.uk
Darren MartinUniversity of Cape TownVerified email at uct.ac.za
Spencer MuseProfessor of Statistics, North Carolina State UniversityVerified email at ncsu.edu
Simon DW FrostMicrosoft ResearchVerified email at microsoft.com
Daniel ShewardKarolinska InstitutetVerified email at ki.se
Gert van ZylDivision of Medical Virology, Stellenbosch University and NHLS TygerbergVerified email at sun.ac.za
Mathieu FourmentUniversity of Technology SydneyVerified email at uts.edu.au
Kemal ErenUniversity of San Diego, CAVerified email at eng.ucsd.edu
Art FY PoonWestern UniversityVerified email at uwo.ca
Charles SpillanePlant & AgriBiosciences Research Centre, Ryan Institute, National University of Ireland GalwayVerified email at nuigalway.ie
Marketa ZvelebilAssistant Professor in Cancer Informatics, ICRVerified email at icr.ac.uk
Penny MooreWITS University and NICDVerified email at nicd.ac.za
John S. TerblancheProfessor, Centre for Invasion Biology, Department of Conservation Ecology & EntomologyVerified email at sun.ac.za
Cang Hui | 惠蒼Professor of Mathematical Biology, Stellenbosch University; Centre for Invasion Biology; AIMSVerified email at sun.ac.za

Konrad Scheffler

Illumina

Verified email at illumina.com

phylogenetics molecular evolution probabilistic modelling genomics


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Detecting individual sites subject to episodic diversifying selection B Murrell, JO Wertheim, S Moola, T Weighill, K Scheffler, SLK Pond PLoS Genet 8 (7), e1002764, 2012	1029*	2012
FUBAR: a fast, unconstrained bayesian approximation for inferring selection B Murrell, S Moola, A Mabona, T Weighill, D Sheward, ... Molecular biology and evolution 30 (5), 1196-1205, 2013	650	2013
A random effects branch-site model for detecting episodic diversifying selection SL Kosakovsky Pond, B Murrell, M Fourment, SDW Frost, W Delport, ... Molecular biology and evolution 28 (11), 3033-3043, 2011	396	2011
Strelka2: fast and accurate calling of germline and somatic variants S Kim, K Scheffler, AL Halpern, MA Bekritsky, E Noh, M Källberg, X Chen, ... Nature methods 15 (8), 591-594, 2018	242	2018
Less is more: an adaptive branch-site random effects model for efficient detection of episodic diversifying selection MD Smith, JO Wertheim, S Weaver, B Murrell, K Scheffler, ... Molecular biology and evolution 32 (5), 1342-1353, 2015	242	2015
RELAX: detecting relaxed selection in a phylogenetic framework JO Wertheim, B Murrell, MD Smith, SL Kosakovsky Pond, K Scheffler Molecular biology and evolution 32 (3), 820-832, 2015	221	2015
Robust inference of positive selection from recombining coding sequences K Scheffler, DP Martin, C Seoighe Bioinformatics 22 (20), 2493-2499, 2006	212	2006
Gene-wide identification of episodic selection B Murrell, S Weaver, MD Smith, JO Wertheim, S Murrell, A Aylward, ... Molecular biology and evolution 32 (5), 1365-1371, 2015	211	2015
Automatic learning of dialogue strategy using dialogue simulation and reinforcement learning K Scheffler, S Young Proceedings of the second international conference on Human Language …, 2002	179	2002
Corpus-based dialogue simulation for automatic strategy learning and evaluation K Scheffler, S Young Proc. NAACL Workshop on Adaptation in Dialogue Systems, 64-70, 2001	117	2001
Evolutionary origins of human herpes simplex viruses 1 and 2 JO Wertheim, MD Smith, DM Smith, K Scheffler, SL Kosakovsky Pond Molecular biology and evolution 31 (9), 2356-2364, 2014	110	2014
Social and genetic networks of HIV-1 transmission in New York City JO Wertheim, SL Kosakovsky Pond, LA Forgione, SR Mehta, B Murrell, ... PLoS pathogens 13 (1), e1006000, 2017	109	2017
Models of coding sequence evolution W Delport, K Scheffler, C Seoighe Briefings in bioinformatics 10 (1), 97-109, 2009	86	2009
CodonTest: modeling amino acid substitution preferences in coding sequences W Delport, K Scheffler, G Botha, MB Gravenor, SV Muse, ... PLoS computational biology 6 (8), e1000885, 2010	75	2010
Evolutionary fingerprinting of genes SL Kosakovsky Pond, K Scheffler, MB Gravenor, AFY Poon, SDW Frost Molecular biology and evolution 27 (3), 520-536, 2010	69	2010
Deep sequencing reveals minor protease resistance mutations in patients failing a protease inhibitor regimen R Fisher, GU van Zyl, SAA Travers, SLK Pond, S Engelbrech, B Murrell, ... Journal of virology 86 (11), 6231-6237, 2012	68*	2012
Frequent toggling between alternative amino acids is driven by selection in HIV-1 W Delport, K Scheffler, C Seoighe PLoS Pathog 4 (12), e1000242, 2008	58	2008
Probabilistic simulation of human-machine dialogues K Scheffler, S Young 2000 IEEE International Conference on Acoustics, Speech, and Signal …, 2000	55	2000
Comprehensive sieve analysis of breakthrough HIV-1 sequences in the RV144 vaccine efficacy trial PT Edlefsen, M Rolland, T Hertz, S Tovanabutra, AJ Gartland, ... PLoS Comput Biol 11 (2), e1003973, 2015	50	2015
Correcting the bias of empirical frequency parameter estimators in codon models SK Pond, W Delport, SV Muse, K Scheffler PLoS One 5 (7), e11230, 2010	48	2010

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