| Analysis of 6.4 million SARS-CoV-2 genomes identifies mutations associated with fitness F Obermeyer, M Jankowiak, N Barkas, SF Schaffner, JD Pyle, ... Science 376 (6599), 1327-1332, 2022 | 185 | 2022 |
| Biology and pathogenesis of satellite viruses JD Pyle, KBG Scholthof Viroids and satellites, 627-636, 2017 | 170* | 2017 |
| A+ 1 ribosomal frameshifting motif prevalent among plant amalgaviruses ML Nibert, JD Pyle, AE Firth Virology 498, 201-208, 2016 | 62 | 2016 |
| Comparative analysis of antiviral responses in Brachypodium distachyon and Setaria viridis reveals conserved and unique outcomes among C3 and C4 plant defenses KK Mandadi, JD Pyle, KBG Scholthof Molecular Plant-Microbe Interactions 27 (11), 1277-1290, 2014 | 47 | 2014 |
| Analysis of 2.1 million SARS-CoV-2 genomes identifies mutations associated with transmissibility F Obermeyer, SF Schaffner, M Jankowiak, N Barkas, JD Pyle, DJ Park, ... MedRxiv, 2021 | 38 | 2021 |
| Synergistic block of SARS-CoV-2 infection by combined drug inhibition of the host entry factors PIKfyve kinase and TMPRSS2 protease AJB Kreutzberger, A Sanyal, R Ojha, JD Pyle, O Vapalahti, G Balistreri, ... Journal of virology 95 (21), 10.1128/jvi. 00975-21, 2021 | 36 | 2021 |
| Multi-Year Pathogen Survey of Biofuel Switchgrass Breeding Plots Reveals High Prevalence of Infections by Panicum mosaic virus and Its Satellite Virus CL Stewart, JD Pyle, CC Jochum, KP Vogel, GY Yuen, KBG Scholthof Phytopathology 105 (8), 1146-1154, 2015 | 23 | 2015 |
| RNA ligands activate the Machupo virus polymerase and guide promoter usage JD Pyle, SPJ Whelan Proceedings of the National Academy of Sciences 116 (21), 10518-10524, 2019 | 20 | 2019 |
| Amalga-like virus infecting Antonospora locustae, a microsporidian pathogen of grasshoppers, plus related viruses associated with other arthropods JD Pyle, PJ Keeling, ML Nibert Virus research 233, 95-104, 2017 | 18 | 2017 |
| Characterization of SCL33 splicing patterns during diverse virus infections in Brachypodium distachyon KK Mandadi, JD Pyle, KBG Scholthof Plant signaling & behavior 10 (8), e1042641, 2015 | 12 | 2015 |
| Structure and function of negative-strand RNA virus polymerase complexes JD Pyle, SPJ Whelan, LM Bloyet The Enzymes 50, 21-78, 2021 | 11 | 2021 |
| Complete nucleotide sequences and virion particle association of two satellite RNAs of panicum mosaic virus JD Pyle, J Monis, KBG Scholthof Virus research 240, 87-93, 2017 | 11 | 2017 |
| De novo generation of helper virus-satellite chimera RNAs results in disease attenuation and satellite sequence acquisition in a host-dependent manner JD Pyle, KBG Scholthof Virology 514, 182-191, 2018 | 10 | 2018 |
| Isolation of reconstructed functional ribonucleoprotein complexes of Machupo virus JD Pyle, SPJ Whelan Journal of virology 95 (22), 10.1128/jvi. 01054-21, 2021 | 8 | 2021 |
| Panicum Mosaic Virus and Its Satellites Acquire RNA Modifications Associated with Host-Mediated Antiviral Degradation JD Pyle, KK Mandadi, KBG Scholthof Mbio 10 (4), 10.1128/mbio. 01900-19, 2019 | 8 | 2019 |
| Panicum mosaic virus-A potential threat to biofuel switchgrass production CL Stewart, GY Yuen, K Vogel, JD Pyle, KBG Scholthof Phytopathology 103 (6), 138-138, 2013 | 3 | 2013 |
| Molecular pathogenesis of viral and subviral agents in model and crop grasses JD Pyle | 2 | 2015 |
| Incidence and impact of dual infection by Panicum mosaic virus and its satellite virus in switchgrass breeding fields CL Stewart, C Jochum, GY Yuen, K Vogel, JD Pyle, KBG Scholthof Phytopathology 104 (11), 114-114, 2014 | 1 | 2014 |
| Virus-encoded glycosyltransferases hypermodify DNA with diverse glycans JD Pyle, SR Lund, KH O'Toole, L Saleh bioRxiv, 2023.12. 21.572611, 2023 | | 2023 |
| Discovery and characterization of C5-methylpyrimidine DNA hypermodification pathways K O'Toole, J Pyle, S Lund, M DeSanctis, S Belkadi, E Burke, YJ Lee, ... Journal of Biological Chemistry 299 (3), S387, 2023 | | 2023 |
