Marc Fiume
Marc Fiume
Verified email at cs.toronto.edu
TitleCited byYear
SHRiMP: accurate mapping of short color-space reads
SM Rumble, P Lacroute, AV Dalca, M Fiume, A Sidow, M Brudno
PLoS computational biology 5 (5), e1000386, 2009
6292009
Similarity network fusion for aggregating data types on a genomic scale
B Wang, AM Mezlini, F Demir, M Fiume, Z Tu, M Brudno, B Haibe-Kains, ...
Nature methods 11 (3), 333, 2014
4582014
Detecting copy number variation with mated short reads
P Medvedev, M Fiume, M Dzamba, T Smith, M Brudno
Genome research 20 (11), 1613-1622, 2010
1652010
P heno T ips: Patient Phenotyping Software for Clinical and Research Use
M Girdea, S Dumitriu, M Fiume, S Bowdin, KM Boycott, S Chénier, ...
Human mutation 34 (8), 1057-1065, 2013
1402013
Savant: genome browser for high-throughput sequencing data
M Fiume, V Williams, A Brook, M Brudno
Bioinformatics 26 (16), 1938-1944, 2010
1252010
iReckon: simultaneous isoform discovery and abundance estimation from RNA-seq data
AM Mezlini, EJM Smith, M Fiume, O Buske, GL Savich, S Shah, S Aparicio, ...
Genome research 23 (3), 519-529, 2013
1102013
Savant Genome Browser 2: visualization and analysis for population-scale genomics
M Fiume, EJM Smith, A Brook, D Strbenac, B Turner, AM Mezlini, ...
Nucleic acids research 40 (W1), W615-W621, 2012
592012
Consent codes: upholding standard data use conditions
SOM Dyke, AA Philippakis, JR De Argila, DN Paltoo, ES Luetkemeier, ...
PLoS genetics 12 (1), e1005772, 2016
362016
The Personal Genome Project Canada: findings from whole genome sequences of the inaugural 56 participants
MS Reuter, S Walker, B Thiruvahindrapuram, J Whitney, I Cohn, ...
CMAJ 190 (5), E126-E136, 2018
172018
Data sharing as a national quality improvement program: reporting on BRCA1 and BRCA2 variant-interpretation comparisons through the Canadian Open …
MS Lebo, KR Zakoor, K Chun, MD Speevak, JS Waye, E McCready, ...
Genetics in Medicine 20 (3), 294, 2018
132018
A step forward for data protection and biomedical research
ES Dove, B Thompson, BM Knoppers
The Lancet 387 (10026), 1374-1375, 2016
122016
ClinGen advancing genomic data‐sharing standards as a GA4GH driver project
L Dolman, A Page, L Babb, RR Freimuth, H Arachchi, C Bizon, M Brush, ...
Human mutation 39 (11), 1686-1689, 2018
52018
Simplifying research access to genomics and health data with Library Cards
MN Cabili, K Carey, SOM Dyke, AJ Brookes, M Fiume, F Jeanson, G Kerry, ...
Scientific data 5, 2018
42018
Registered access: authorizing data access
SOM Dyke, M Linden, I Lappalainen, JR De Argila, K Carey, D Lloyd, ...
European Journal of Human Genetics 26 (12), 1721, 2018
32018
MedSavant: Visual analytics for genetic variation datasets
M Fiume, EJ Smith, A Brook, M Brudno
BioVis Posters Abstracts, 2012
22012
Federated discovery and sharing of genomic data using Beacons
M Fiume, M Cupak, S Keenan, J Rambla, S de la Torre, SOM Dyke, ...
Nature biotechnology 37 (3), 220, 2019
12019
Variant detection and the Autism sequencing project
O Buske, M Dzamba, J Foong, L Lau, M Fiume, C Marshall, S Walker, ...
BMC bioinformatics 12 (11), A4, 2011
12011
The Personal Genome Project Canada
M Reuter, S Walker, B Thiruvahindrapuram, J Whitney, I Cohn, ...
Cmaj Canadian Medical Association Journal 190 (5), 2018
2018
System for Interpretation of Personal Genomes
M Fiume
2015
iReckon: Simultaneous isoform discovery and abundance
AM Mezlini, EJM Smith, M Fiume
2012
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Articles 1–20