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Marc Fiume
Marc Fiume
Verified email at cs.toronto.edu
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Cited by
Cited by
Year
Similarity network fusion for aggregating data types on a genomic scale
B Wang, AM Mezlini, F Demir, M Fiume, Z Tu, M Brudno, B Haibe-Kains, ...
Nature methods 11 (3), 333-337, 2014
17852014
SHRiMP: accurate mapping of short color-space reads
SM Rumble, P Lacroute, AV Dalca, M Fiume, A Sidow, M Brudno
PLoS computational biology 5 (5), e1000386, 2009
7702009
P heno t ips: Patient phenotyping software for clinical and research use
M Girdea, S Dumitriu, M Fiume, S Bowdin, KM Boycott, S Chénier, ...
Human mutation 34 (8), 1057-1065, 2013
2472013
Detecting copy number variation with mated short reads
P Medvedev, M Fiume, M Dzamba, T Smith, M Brudno
Genome research 20 (11), 1613-1622, 2010
2212010
iReckon: simultaneous isoform discovery and abundance estimation from RNA-seq data
AM Mezlini, EJM Smith, M Fiume, O Buske, GL Savich, S Shah, S Aparicio, ...
Genome research 23 (3), 519-529, 2013
1622013
Savant: genome browser for high-throughput sequencing data
M Fiume, V Williams, A Brook, M Brudno
Bioinformatics 26 (16), 1938-1944, 2010
1592010
GA4GH: International policies and standards for data sharing across genomic research and healthcare
HL Rehm, AJH Page, L Smith, JB Adams, G Alterovitz, LJ Babb, ...
Cell genomics 1 (2), 2021
1492021
Genomic architecture of autism from comprehensive whole-genome sequence annotation
B Trost, B Thiruvahindrapuram, AJS Chan, W Engchuan, ...
Cell 185 (23), 4409-4427. e18, 2022
992022
Consent codes: upholding standard data use conditions
SOM Dyke, AA Philippakis, J Rambla De Argila, DN Paltoo, ...
PLoS genetics 12 (1), e1005772, 2016
882016
Federated discovery and sharing of genomic data using Beacons
M Fiume, M Cupak, S Keenan, J Rambla, S de la Torre, SOM Dyke, ...
Nature biotechnology 37 (3), 220-224, 2019
832019
Savant Genome Browser 2: visualization and analysis for population-scale genomics
M Fiume, EJM Smith, A Brook, D Strbenac, B Turner, AM Mezlini, ...
Nucleic acids research 40 (W1), W615-W621, 2012
752012
The Personal Genome Project Canada: findings from whole genome sequences of the inaugural 56 participants
MS Reuter, S Walker, B Thiruvahindrapuram, J Whitney, I Cohn, ...
Cmaj 190 (5), E126-E136, 2018
642018
Registered access: authorizing data access
SOM Dyke, M Linden, I Lappalainen, JR De Argila, K Carey, D Lloyd, ...
European Journal of Human Genetics 26 (12), 1721-1731, 2018
392018
Data sharing as a national quality improvement program: reporting on BRCA1 and BRCA2 variant-interpretation comparisons through the Canadian Open Genetics Repository (COGR)
MS Lebo, KR Zakoor, K Chun, MD Speevak, JS Waye, E McCready, ...
Genetics in Medicine 20 (3), 294-302, 2018
382018
International federation of genomic medicine databases using GA4GH standards
A Thorogood, HL Rehm, P Goodhand, AJH Page, Y Joly, M Baudis, ...
Cell Genomics 1 (2), 2021
302021
ClinGen advancing genomic data‐sharing standards as a GA4GH driver project
L Dolman, A Page, L Babb, RR Freimuth, H Arachchi, C Bizon, M Brush, ...
Human mutation 39 (11), 1686-1689, 2018
212018
Simplifying research access to genomics and health data with Library Cards
MN Cabili, K Carey, SOM Dyke, AJ Brookes, M Fiume, F Jeanson, G Kerry, ...
Scientific data 5 (1), 1-5, 2018
132018
A federated ecosystem for sharing genomic, clinical data
A Page, D Baker, M Bobrow, K Boycott, J Burn, S Chanock, S Donnelly, ...
Science, 2016
122016
Genomic architecture of autism spectrum disorder from comprehensive whole-genome sequence annotation
B Trost, B Thiruvahindrapuram, AJS Chan, W Engchuan, ...
MedRxiv, 2022.05. 05.22274031, 2022
32022
System for Interpretation of Personal Genomes
M Fiume
University of Toronto (Canada), 2015
22015
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Articles 1–20