Raphael Gottardo
Title
Cited by
Cited by
Year
Orchestrating high-throughput genomic analysis with Bioconductor
W Huber, VJ Carey, R Gentleman, S Anders, M Carlson, BS Carvalho, ...
Nature methods 12 (2), 115, 2015
20962015
MAST: a flexible statistical framework for assessing transcriptional changes and characterizing heterogeneity in single-cell RNA sequencing data
G Finak, A McDavid, M Yajima, J Deng, V Gersuk, AK Shalek, CK Slichter, ...
Genome biology 16 (1), 1-13, 2015
8612015
Critical assessment of automated flow cytometry data analysis techniques
N Aghaeepour, G Finak, H Hoos, TR Mosmann, R Brinkman, R Gottardo, ...
Nature methods 10 (3), 228-238, 2013
5212013
Model-based analysis of tiling-arrays for ChIP-chip
WE Johnson, W Li, CA Meyer, R Gottardo, JS Carroll, M Brown, XS Liu
Proceedings of the National Academy of Sciences 103 (33), 12457-12462, 2006
4942006
Exosomes in human semen carry a distinctive repertoire of small non-coding RNAs with potential regulatory functions
L Vojtech, S Woo, S Hughes, C Levy, L Ballweber, RP Sauteraud, J Strobl, ...
Nucleic acids research 42 (11), 7290-7304, 2014
3832014
Automated gating of flow cytometry data via robust model‐based clustering
K Lo, RR Brinkman, R Gottardo
Cytometry Part A: the journal of the International Society for Analytical …, 2008
2872008
Combining mixture components for clustering
JP Baudry, AE Raftery, G Celeux, K Lo, R Gottardo
Journal of computational and graphical statistics 19 (2), 332-353, 2010
2852010
Data exploration, quality control and testing in single-cell qPCR-based gene expression experiments
A McDavid, G Finak, PK Chattopadyay, M Dominguez, L Lamoreaux, ...
Bioinformatics 29 (4), 461-467, 2013
2632013
Plasma IgG to linear epitopes in the V2 and V3 regions of HIV-1 gp120 correlate with a reduced risk of infection in the RV144 vaccine efficacy trial
R Gottardo, RT Bailer, BT Korber, S Gnanakaran, J Phillips, X Shen, ...
PloS one 8 (9), e75665, 2013
2162013
The Thai Phase III HIV Type 1 Vaccine trial (RV144) regimen induces antibodies that target conserved regions within the V2 loop of gp120
N Karasavvas, E Billings, M Rao, C Williams, S Zolla-Pazner, RT Bailer, ...
AIDS research and human retroviruses 28 (11), 1444-1457, 2012
2072012
Global panel of HIV-1 Env reference strains for standardized assessments of vaccine-elicited neutralizing antibodies
A deCamp, P Hraber, RT Bailer, MS Seaman, C Ochsenbauer, J Kappes, ...
Journal of virology 88 (5), 2489-2507, 2014
2022014
Standardizing flow cytometry immunophenotyping analysis from the human immunophenotyping consortium
G Finak, M Langweiler, M Jaimes, M Malek, J Taghiyar, Y Korin, ...
Scientific reports 6 (1), 1-11, 2016
1852016
Safety and immunogenicity of a mRNA rabies vaccine in healthy adults: an open-label, non-randomised, prospective, first-in-human phase 1 clinical trial
M Alberer, U Gnad-Vogt, HS Hong, KT Mehr, L Backert, G Finak, ...
The Lancet 390 (10101), 1511-1520, 2017
1662017
flowClust: a Bioconductor package for automated gating of flow cytometry data
K Lo, F Hahne, RR Brinkman, R Gottardo
BMC bioinformatics 10 (1), 1-8, 2009
1562009
Analysis of V2 antibody responses induced in vaccinees in the ALVAC/AIDSVAX HIV-1 vaccine efficacy trial
S Zolla-Pazner, AC deCamp, T Cardozo, N Karasavvas, R Gottardo, ...
PloS one 8 (1), e53629, 2013
1472013
Phosphoproteomic analysis of chimeric antigen receptor signaling reveals kinetic and quantitative differences that affect cell function
AI Salter, RG Ivey, JJ Kennedy, V Voillet, A Rajan, EJ Alderman, ...
Science signaling 11 (544), 2018
1462018
Immunological and virological mechanisms of vaccine-mediated protection against SIV and HIV
M Roederer, BF Keele, SD Schmidt, RD Mason, HC Welles, W Fischer, ...
Nature 505 (7484), 502-508, 2014
1342014
Bayesian robust inference for differential gene expression in microarrays with multiple samples
R Gottardo, AE Raftery, KA Yee Yeung, RE Bumgarner
Biometrics 62 (1), 10-18, 2006
1212006
OpenCyto: an open source infrastructure for scalable, robust, reproducible, and automated, end-to-end flow cytometry data analysis
G Finak, J Frelinger, W Jiang, EW Newell, J Ramey, MM Davis, ...
PLoS Comput Biol 10 (8), e1003806, 2014
1192014
Merging mixture components for cell population identification in flow cytometry
G Finak, A Bashashati, R Brinkman, R Gottardo
Advances in bioinformatics 2009, 2009
1182009
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Articles 1–20