| Local DNA hypomethylation activates genes in rice endosperm A Zemach, MY Kim, P Silva, JA Rodrigues, B Dotson, MD Brooks, ... Proceedings of the National Academy of Sciences 107 (43), 18729-18734, 2010 | 403 | 2010 |
| Nitrate in 2020: thirty years from transport to signaling networks EA Vidal, JM Alvarez, V Araus, E Riveras, MD Brooks, G Krouk, S Ruffel, ... The Plant Cell 32 (7), 2094-2119, 2020 | 234 | 2020 |
| Arabidopsis GH3. 12 (PBS3) conjugates amino acids to 4-substituted benzoates and is inhibited by salicylate RA Okrent, MD Brooks, MC Wildermuth Journal of Biological Chemistry 284 (15), 9742-9754, 2009 | 167 | 2009 |
| Temporal transcriptional logic of dynamic regulatory networks underlying nitrogen signaling and use in plants K Varala, A Marshall-Colón, J Cirrone, MD Brooks, AV Pasquino, S Léran, ... Proceedings of the National Academy of Sciences 115 (25), 6494-6499, 2018 | 164 | 2018 |
| Network Walking charts transcriptional dynamics of nitrogen signaling by integrating validated and predicted genome-wide interactions MD Brooks, J Cirrone, AV Pasquino, JM Alvarez, J Swift, S Mittal, ... Nature communications 10 (1), 1569, 2019 | 124 | 2019 |
| Transient genome-wide interactions of the master transcription factor NLP7 initiate a rapid nitrogen-response cascade JM Alvarez, AL Schinke, MD Brooks, A Pasquino, L Leonelli, K Varala, ... Nature communications 11 (1), 1157, 2020 | 107 | 2020 |
| A thioredoxin-like/β-propeller protein maintains the efficiency of light harvesting in Arabidopsis MD Brooks, EJ Sylak-Glassman, GR Fleming, KK Niyogi Proceedings of the National Academy of Sciences 110 (29), E2733-E2740, 2013 | 95 | 2013 |
| Distinct roles of the photosystem II protein PsbS and zeaxanthin in the regulation of light harvesting in plants revealed by fluorescence lifetime snapshots EJ Sylak-Glassman, A Malnoë, E De Re, MD Brooks, AL Fischer, ... Proceedings of the National Academy of Sciences 111 (49), 17498-17503, 2014 | 69 | 2014 |
| Use of a pulse-amplitude modulated chlorophyll fluorometer to study the efficiency of photosynthesis in Arabidopsis plants MD Brooks, KK Niyogi Chloroplast Research in Arabidopsis: Methods and Protocols, Volume II, 299-310, 2011 | 62 | 2011 |
| Engineering the lutein epoxide cycle into Arabidopsis thaliana L Leonelli, MD Brooks, KK Niyogi Proceedings of the National Academy of Sciences 114 (33), E7002-E7008, 2017 | 38 | 2017 |
| ConnecTF: A platform to integrate transcription factor–gene interactions and validate regulatory networks MD Brooks, CL Juang, MS Katari, JM Alvarez, A Pasquino, HJ Shih, ... Plant physiology 185 (1), 49-66, 2021 | 35 | 2021 |
| Atomic Force Microscopy of Photosystem II and Its Unit Cell Clustering Quantitatively Delineate the Mesoscale Variability in Arabidopsis Thylakoids B Onoa, AR Schneider, MD Brooks, P Grob, E Nogales, PL Geissler, ... PLoS One 9 (7), e101470, 2014 | 28 | 2014 |
| SDG8-mediated histone methylation and RNA processing function in the response to nitrate signaling Y Li, M Brooks, J Yeoh-Wang, RM McCoy, TM Rock, A Pasquino, CI Moon, ... Plant physiology 182 (1), 215-227, 2020 | 24 | 2020 |
| Time-based systems biology approaches to capture and model dynamic gene regulatory networks JM Alvarez, MD Brooks, J Swift, GM Coruzzi Annual Review of Plant Biology 72, 105-131, 2021 | 20 | 2021 |
| PsbS-dependent non-photochemical quenching MD Brooks, S Jansson, KK Niyogi Non-photochemical quenching and energy dissipation in plants, algae and …, 2014 | 20 | 2014 |
| OutPredict: multiple datasets can improve prediction of expression and inference of causality J Cirrone, MD Brooks, R Bonneau, GM Coruzzi, DE Shasha Scientific reports 10 (1), 6804, 2020 | 15 | 2020 |
| Dynamic mechanical responses of Arabidopsis thylakoid membranes during PSII-specific illumination CH Clausen, MD Brooks, P Grob, G Kemalyan, E Nogales, KK Niyogi, ... Biophysical Journal 106 (9), 1864-1870, 2014 | 12 | 2014 |
| A suppressor of quenching regulates photosynthetic light harvesting MD Brooks University of California, Berkeley, 2012 | 8 | 2012 |
| Multiple genomic regions govern tolerance to sulfentrazone in snap bean (Phaseolus vulgaris L.) A Saballos, A Soler-Garzón, M Brooks, JP Hart, AE Lipka, P Miklas, ... Frontiers in Agronomy 4, 869770, 2022 | 7 | 2022 |
| Validation of a high-confidence regulatory network for gene-to-NUE phenotype in field-grown rice CM Shanks, J Huang, CY Cheng, HJS Shih, MD Brooks, JM Alvarez, ... Frontiers in plant science 13, 1006044, 2022 | 4 | 2022 |
