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Reuben Thomas
Reuben Thomas
Associate Core Director, Bioinformatics
Verified email at gladstone.ucsf.edu
Title
Cited by
Cited by
Year
A single‐centre experience of chemoradiotherapy for rectal cancer: is there potential for nonoperative management?
RSJ Dalton, R Velineni, ME Osborne, R Thomas, S Harries, AS Gee, ...
Colorectal Disease 14 (5), 567-571, 2012
1842012
Features that define the best ChIP-seq peak calling algorithms
R Thomas, S Thomas, AK Holloway, KS Pollard
Briefings in bioinformatics 18 (3), 441-450, 2017
1422017
Transcriptional profiling and therapeutic targeting of oxidative stress in neuroinflammation
AS Mendiola, JK Ryu, S Bardehle, A Meyer-Franke, KKH Ang, C Wilson, ...
Nature immunology 21 (5), 513-524, 2020
1412020
Global gene expression profiling of a population exposed to a range of benzene levels
CM McHale, L Zhang, Q Lan, R Vermeulen, G Li, AE Hubbard, KE Porter, ...
Environmental health perspectives 119 (5), 628-640, 2011
1192011
Genetic and environmental pathways to complex diseases
JM Gohlke, R Thomas, Y Zhang, MC Rosenstein, AP Davis, C Murphy, ...
BMC Systems Biology 3, 1-15, 2009
1012009
Microglial Gi-dependent dynamics regulate brain network hyperexcitability
M Merlini, VA Rafalski, K Ma, KY Kim, EA Bushong, PE Rios Coronado, ...
Nature neuroscience 24 (1), 19-23, 2021
982021
Context-specific transcription factor functions regulate epigenomic and transcriptional dynamics during cardiac reprogramming
NR Stone, CA Gifford, R Thomas, KJB Pratt, K Samse-Knapp, ...
Cell stem cell 25 (1), 87-102. e9, 2019
972019
The Next Generation of Risk Assessment multi-year study—highlights of findings, applications to risk assessment, and future directions
I Cote, ME Andersen, GT Ankley, S Barone, LS Birnbaum, K Boekelheide, ...
Environmental health perspectives 124 (11), 1671-1682, 2016
912016
Phosphorylation of tau at Y18, but not tau-fyn binding, is required for tau to modulate NMDA receptor-dependent excitotoxicity in primary neuronal culture
T Miyamoto, L Stein, R Thomas, B Djukic, P Taneja, J Knox, K Vossel, ...
Molecular neurodegeneration 12, 1-19, 2017
882017
Estimating the global public health implications of electricity and coal consumption
JM Gohlke, R Thomas, A Woodward, D Campbell-Lendrum, ...
Environmental health perspectives 119 (6), 821-826, 2011
812011
Inhaled formaldehyde induces DNA–protein crosslinks and oxidative stress in bone marrow and other distant organs of exposed mice
X Ye, Z Ji, C Wei, CM McHale, S Ding, R Thomas, X Yang, L Zhang
Environmental and molecular mutagenesis 54 (9), 705-718, 2013
752013
Answer ALS, a large-scale resource for sporadic and familial ALS combining clinical and multi-omics data from induced pluripotent cell lines
EG Baxi, T Thompson, J Li, JA Kaye, RG Lim, J Wu, D Ramamoorthy, ...
Nature neuroscience 25 (2), 226-237, 2022
732022
Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir
J Neidleman, X Luo, J Frouard, G Xie, F Hsiao, T Ma, V Morcilla, A Lee, ...
Elife 9, e60933, 2020
692020
Modeling human TBX5 haploinsufficiency predicts regulatory networks for congenital heart disease
IS Kathiriya, KS Rao, G Iacono, WP Devine, AP Blair, SK Hota, MH Lai, ...
Developmental cell 56 (3), 292-309. e9, 2021
682021
A chromatin accessibility atlas of the developing human telencephalon
E Markenscoff-Papadimitriou, S Whalen, P Przytycki, R Thomas, ...
Cell 182 (3), 754-769. e18, 2020
682020
Genome-wide functional profiling reveals genes required for tolerance to benzene metabolites in yeast
M North, VJ Tandon, R Thomas, A Loguinov, I Gerlovina, AE Hubbard, ...
PloS one 6 (8), e24205, 2011
642011
A model-based optimization framework for the inference on gene regulatory networks from DNA array data
R Thomas, S Mehrotra, ET Papoutsakis, V Hatzimanikatis
Bioinformatics 20 (17), 3221-3235, 2004
622004
Analysis of the transcriptome in molecular epidemiology studies
CM McHale, L Zhang, R Thomas, MT Smith
Environmental and molecular mutagenesis 54 (7), 500-517, 2013
482013
Low-dose metabolism of benzene in humans: science and obfuscation
SM Rappaport, S Kim, R Thomas, BA Johnson, FY Bois, LL Kupper
Carcinogenesis 34 (1), 2-9, 2013
482013
Dynamic BAF chromatin remodeling complex subunit inclusion promotes temporally distinct gene expression programs in cardiogenesis
SK Hota, JR Johnson, E Verschueren, R Thomas, AM Blotnick, Y Zhu, ...
Development 146 (19), dev174086, 2019
462019
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