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Anna Panchenko
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Database resources of the national center for biotechnology information
EW Sayers, T Barrett, DA Benson, E Bolton, SH Bryant, K Canese, ...
Nucleic acids research 39 (suppl_1), D38-D51, 2010
25302010
CDD: a curated Entrez database of conserved domain alignments
A Marchler-Bauer, JB Anderson, C DeWeese-Scott, ND Fedorova, ...
Nucleic acids research 31 (1), 383-387, 2003
9072003
CDD: a database of conserved domain alignments with links to domain three-dimensional structure
A Marchler-Bauer, AR Panchenko, BA Shoemaker, PA Thiessen, LY Geer, ...
Nucleic acids research 30 (1), 281-283, 2002
7582002
Database resources of the national center for biotechnology information
EW Sayers, T Barrett, DA Benson, E Bolton, SH Bryant, K Canese, ...
Nucleic acids research 40 (D1), D13-D25, 2012
6502012
Deciphering protein–protein interactions. Part I. Experimental techniques and databases
BA Shoemaker, AR Panchenko
PLoS computational biology 3 (3), e42, 2007
5142007
Database resources of the national center for biotechnology information
R Agarwala, T Barrett, J Beck, DA Benson, C Bollin, E Bolton, D Bourexis, ...
Nucleic Acids Research 46 (D1), D8-D13, 2017
458*2017
Deciphering protein–protein interactions. Part II. Computational methods to predict protein and domain interaction partners
BA Shoemaker, AR Panchenko
PLoS computational biology 3 (4), e43, 2007
4502007
Database resources of the national center for biotechnology information
R Agarwala
Nucleic acids research 43 (D1), D6-D17, 2014
4252014
Phosphorylation in protein-protein binding: effect on stability and function
H Nishi, K Hashimoto, AR Panchenko
Structure 19 (12), 1807-1815, 2011
3632011
Molecular mechanisms of disease-causing missense mutations
S Stefl, H Nishi, M Petukh, AR Panchenko, E Alexov
Journal of molecular biology 425 (21), 3919-3936, 2013
2952013
Physicochemical mechanisms of protein regulation by phosphorylation
H Nishi, A Shaytan, AR Panchenko
Frontiers in genetics 5, 97639, 2014
2282014
MMDB: Entrez's 3D-structure database
J Chen, JB Anderson, C DeWeese-Scott, ND Fedorova, LY Geer, S He, ...
Nucleic Acids Research 31 (1), 474-477, 2003
2252003
Foldons, protein structural modules, and exons.
AR Panchenko, Z Luthey-Schulten, PG Wolynes
Proceedings of the National Academy of Sciences 93 (5), 2008-2013, 1996
2241996
Mechanisms of protein oligomerization, the critical role of insertions and deletions in maintaining different oligomeric states
K Hashimoto, AR Panchenko
Proceedings of the National Academy of Sciences 107 (47), 20352-20357, 2010
2092010
The relationship of protein conservation and sequence length
DJ Lipman, A Souvorov, EV Koonin, AR Panchenko, TA Tatusova
BMC evolutionary biology 2, 1-10, 2002
1852002
Prediction of functional sites by analysis of sequence and structure conservation
AR Panchenko, F Kondrashov, S Bryant
Protein science 13 (4), 884-892, 2004
1772004
Combination of threading potentials and sequence profiles improves fold recognition
AR Panchenko, A Marchler-Bauer, SH Bryant
Journal of molecular biology 296 (5), 1319-1331, 2000
1482000
HistoneDB 2.0: a histone database with variants—an integrated resource to explore histones and their variants
EJ Draizen, AK Shaytan, L Mariño-Ramírez, PB Talbert, D Landsman, ...
Database 2016, 2016
1432016
MMDB: 3D structures and macromolecular interactions
T Madej, KJ Addess, JH Fong, LY Geer, RC Geer, CJ Lanczycki, C Liu, ...
Nucleic acids research 40 (D1), D461-D464, 2012
1422012
Coupling between histone conformations and DNA geometry in nucleosomes on a microsecond timescale: atomistic insights into nucleosome functions
AK Shaytan, GA Armeev, A Goncearenco, VB Zhurkin, D Landsman, ...
Journal of molecular biology 428 (1), 221-237, 2016
1392016
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