Jüri Reimand

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Gary BaderProfessor of Molecular Genetics and Computer Science, The Donnelly Centre, University of TorontoVerified email at utoronto.ca
Meelis KullAssociate Professor, University of TartuVerified email at ut.ee
Mona MeyerHospital for Sick Children, Toronto, CanadaVerified email at sickkids.ca
Nuria Lopez-BigasICREA Research Professor at the Institute for Research in BiomedicineVerified email at irbbarcelona.org
Abel Gonzalez-PerezInstitut de Recerca Biomedica BarcelonaVerified email at irbbarcelona.org
Paul C. BoutrosUniversity of California, Los AngelesVerified email at mednet.ucla.edu
Lincoln SteinDirector of Informatics and Biocomputing, Ontario Institute for Cancer Research Verified email at oicr.on.ca
Peter DirksProfessor of SurgeryVerified email at sickkids.ca
Omar WagihDeep GenomicsVerified email at deepgenomics.com
David TamboreroVerified email at upf.edu
Liis Uusküla-ReimandSickKids Research InstituteVerified email at sickkids.ca
Raivo KoldeSenior Research Fellow, University of TartuVerified email at ut.ee
Francis OuelletteOrigin BioinformaticsVerified email at bioinformatics.ca
Ruth IsserlinDonnelly Centre, University of TorontoVerified email at utoronto.ca
Daniele MericoDeep Genomics Inc.Verified email at deepgenomics.com
Gad GetzMassachusetts General Hospital and Broad Institute of Harvard and MITVerified email at broadinstitute.org
Cyriac KandothUniversity of California Los AngelesVerified email at mednet.ucla.edu
Michael D. WilsonUniversity of Toronto and SickKids Research InstituteVerified email at sickkids.ca
Richard MarcotteNational Research Council CanadaVerified email at cnrc-nrc.gc.ca
Azin SayadPrincess Margaret Cancer Centre, University Health NetworkVerified email at uhnres.utoronto.ca

Jüri Reimand

Associate professor, Ontario Institute for Cancer Research, University of Toronto

Verified email at utoronto.ca

computational biology cancer genomics pathway analysis gene regulation cell signaling


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g: Profiler—a web server for functional interpretation of gene lists (2016 update) J Reimand, T Arak, P Adler, L Kolberg, S Reisberg, H Peterson, J Vilo Nucleic acids research, gkw199, 2016	988	2016
g: Profiler—a web-based toolset for functional profiling of gene lists from large-scale experiments J Reimand, M Kull, H Peterson, J Hansen, J Vilo Nucleic acids research 35 (suppl_2), W193-W200, 2007	914	2007
Subgroup-specific structural variation across 1,000 medulloblastoma genomes PA Northcott, DJH Shih, J Peacock, L Garzia, AS Morrissy, T Zichner, ... Nature 488 (7409), 49-56, 2012	747	2012
Molecular classification of ependymal tumors across all CNS compartments, histopathological grades, and age groups KW Pajtler, H Witt, M Sill, DTW Jones, V Hovestadt, F Kratochwil, K Wani, ... Cancer Cell 27 (5), 728-743, 2015	697	2015
Genome sequencing of SHH medulloblastoma predicts genotype-related response to smoothened inhibition M Kool, DTW Jones, N Jäger, PA Northcott, TJ Pugh, V Hovestadt, ... Cancer cell 25 (3), 393-405, 2014	589	2014
Intertumoral Heterogeneity within Medulloblastoma Subgroups FMG Cavalli, M Remke, L Rampasek, J Peacock, DJH Shih, B Luu, ... Cancer Cell 31 (6), 737-754. e6, 2017	577	2017
Pan-cancer analysis of whole genomes TITPCAWG Consortium Nature 578 (7793), 82–93, 2020	574*	2020
g: Profiler—a web server for functional interpretation of gene lists (2011 update) J Reimand, T Arak, J Vilo Nucleic acids research 39 (suppl 2), W307-W315, 2011	525	2011
New brain tumor entities emerge from molecular classification of CNS-PNETs D Sturm, BA Orr, UH Toprak, V Hovestadt, DTW Jones, D Capper, M Sill, ... Cell 164 (5), 1060-1072, 2016	512	2016
Pathway enrichment analysis and visualization of omics data using g: Profiler, GSEA, Cytoscape and EnrichmentMap J Reimand, R Isserlin, V Voisin, M Kucera, C Tannus-Lopes, ... Nature Protocols, 1, 2019	506	2019
Comprehensive identification of mutational cancer driver genes across 12 tumor types D Tamborero, A Gonzalez-Perez, C Perez-Llamas, J Deu-Pons, ... Scientific reports 3 (1), 1-10, 2013	457	2013
Pathogenic germline variants in 10,389 adult cancers K Huang, RJ Mashl, Y Wu, DI Ritter, J Wang, C Oh, M Paczkowska, ... Cell 173 (2), 355-370. e14, 2018	375	2018
Functional genomic landscape of human breast cancer drivers, vulnerabilities, and resistance R Marcotte, A Sayad, KR Brown, F Sanchez-Garcia, J Reimand, M Haider, ... Cell 164 (1), 293-309, 2016	304	2016
Single cell-derived clonal analysis of human glioblastoma links functional and genomic heterogeneity M Meyer, J Reimand, X Lan, R Head, X Zhu, M Kushida, J Bayani, ... Proceedings of the National Academy of Sciences 112 (3), 851-856, 2015	301	2015
Pathway and network analysis of cancer genomes P Creixell, J Reimand, S Haider, G Wu, T Shibata, M Vazquez, ... Nature methods 12 (7), 615, 2015	284	2015
Divergent clonal selection dominates medulloblastoma at recurrence. AS Morrissy, L Garzia, DJ Shih, S Zuyderduyn, X Huang, P Skowron, ... Nature 529, 351-7, 2016	270	2016
Systematic analysis of somatic mutations in phosphorylation signaling predicts novel cancer drivers J Reimand, GD Bader Molecular systems biology 9 (1), 637, 2013	236	2013
Analyses of non-coding somatic drivers in 2,658 cancer whole genomes E Rheinbay, MM Nielsen, F Abascal, JA Wala, O Shapira, G Tiao, ... Nature 578 (7793), 102-111, 2020	226	2020
The mutational landscape of phosphorylation signaling in cancer J Reimand, O Wagih, GD Bader Scientific reports 3 (1), 1-9, 2013	169	2013
Computational approaches to identify functional genetic variants in cancer genomes A Gonzalez-Perez, V Mustonen, B Reva, GRS Ritchie, P Creixell, ... Nature methods 10 (8), 723, 2013	165	2013

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