Jüri Reimand

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Gary BaderProfessor of Molecular Genetics and Computer Science, The Donnelly Centre, University of TorontoVerified email at utoronto.ca
Mona MeyerHospital for Sick Children, Toronto, CanadaVerified email at sickkids.ca
Meelis KullAssociate Professor, University of TartuVerified email at ut.ee
Peter DirksProfessor of SurgeryVerified email at sickkids.ca
Liis Uusküla-ReimandSickKids Research InstituteVerified email at sickkids.ca
Omar WagihDeep GenomicsVerified email at deepgenomics.com
Nuria Lopez-BigasICREA Research Professor at the Institute for Research in BiomedicineVerified email at irbbarcelona.org
David TamboreroVerified email at scilifelab.se
Abel Gonzalez-PerezInstitut de Recerca Biomedica BarcelonaVerified email at irbbarcelona.org
Raivo KoldeSenior Research Fellow, University of TartuVerified email at ut.ee
Ruth IsserlinDonnelly Centre, University of TorontoVerified email at utoronto.ca
Daniele MericoDeep Genomics Inc.Verified email at deepgenomics.com
Michał KrassowskiUniversity of OxfordVerified email at seh.ox.ac.uk
Paul C. BoutrosUniversity of California, Los AngelesVerified email at mednet.ucla.edu
Helen ZhuUniversity of TorontoVerified email at uhnresearch.ca
Michael D. WilsonUniversity of Toronto and SickKids Research InstituteVerified email at sickkids.ca
Gad GetzMassachusetts General Hospital and Broad Institute of Harvard and MITVerified email at broadinstitute.org
Richard MarcotteNational Research Council CanadaVerified email at cnrc-nrc.gc.ca
Azin SayadPrincess Margaret Cancer Centre, University Health NetworkVerified email at uhnresearch.ca
Benjamin G. NeelProfessor of Medicine, NYU School of Medicine; Director, Laura and Isaac Perlmutter Cancer CenterVerified email at nyulangone.org

Jüri Reimand

Associate professor, Ontario Institute for Cancer Research, University of Toronto

Verified email at utoronto.ca

computational biology cancer genomics pathway analysis gene regulation cell signaling


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Pan-cancer analysis of whole genomes TITPCAWG Consortium Nature 578 (7793), 82–93, 2020	1184*	2020
g: Profiler—a web server for functional interpretation of gene lists (2016 update) J Reimand, T Arak, P Adler, L Kolberg, S Reisberg, H Peterson, J Vilo Nucleic acids research, gkw199, 2016	1163	2016
g: Profiler—a web-based toolset for functional profiling of gene lists from large-scale experiments J Reimand, M Kull, H Peterson, J Hansen, J Vilo Nucleic acids research 35 (suppl_2), W193-W200, 2007	1120	2007
Pathway enrichment analysis and visualization of omics data using g: Profiler, GSEA, Cytoscape and EnrichmentMap J Reimand, R Isserlin, V Voisin, M Kucera, C Tannus-Lopes, ... Nature Protocols, 1, 2019	940	2019
Molecular classification of ependymal tumors across all CNS compartments, histopathological grades, and age groups KW Pajtler, H Witt, M Sill, DTW Jones, V Hovestadt, F Kratochwil, K Wani, ... Cancer Cell 27 (5), 728-743, 2015	899	2015
Subgroup-specific structural variation across 1,000 medulloblastoma genomes PA Northcott, DJH Shih, J Peacock, L Garzia, AS Morrissy, T Zichner, ... Nature 488 (7409), 49-56, 2012	851	2012
Intertumoral Heterogeneity within Medulloblastoma Subgroups FMG Cavalli, M Remke, L Rampasek, J Peacock, DJH Shih, B Luu, ... Cancer Cell 31 (6), 737-754. e6, 2017	823	2017
Genome sequencing of SHH medulloblastoma predicts genotype-related response to smoothened inhibition M Kool, DTW Jones, N Jäger, PA Northcott, TJ Pugh, V Hovestadt, ... Cancer cell 25 (3), 393-405, 2014	701	2014
New brain tumor entities emerge from molecular classification of CNS-PNETs D Sturm, BA Orr, UH Toprak, V Hovestadt, DTW Jones, D Capper, M Sill, ... Cell 164 (5), 1060-1072, 2016	662	2016
Pathogenic germline variants in 10,389 adult cancers K Huang, RJ Mashl, Y Wu, DI Ritter, J Wang, C Oh, M Paczkowska, ... Cell 173 (2), 355-370. e14, 2018	563	2018
g: Profiler—a web server for functional interpretation of gene lists (2011 update) J Reimand, T Arak, J Vilo Nucleic acids research 39 (suppl 2), W307-W315, 2011	554	2011
Comprehensive identification of mutational cancer driver genes across 12 tumor types D Tamborero, A Gonzalez-Perez, C Perez-Llamas, J Deu-Pons, ... Scientific reports 3 (1), 1-10, 2013	498	2013
Functional genomic landscape of human breast cancer drivers, vulnerabilities, and resistance R Marcotte, A Sayad, KR Brown, F Sanchez-Garcia, J Reimand, M Haider, ... Cell 164 (1), 293-309, 2016	388	2016
Analyses of non-coding somatic drivers in 2,658 cancer whole genomes E Rheinbay, MM Nielsen, F Abascal, JA Wala, O Shapira, G Tiao, ... Nature 578 (7793), 102-111, 2020	369	2020
Single cell-derived clonal analysis of human glioblastoma links functional and genomic heterogeneity M Meyer, J Reimand, X Lan, R Head, X Zhu, M Kushida, J Bayani, ... Proceedings of the National Academy of Sciences 112 (3), 851-856, 2015	355	2015
Pathway and network analysis of cancer genomes P Creixell, J Reimand, S Haider, G Wu, T Shibata, M Vazquez, ... Nature methods 12 (7), 615, 2015	337*	2015
Divergent clonal selection dominates medulloblastoma at recurrence. AS Morrissy, L Garzia, DJ Shih, S Zuyderduyn, X Huang, P Skowron, ... Nature 529, 351-7, 2016	308	2016
Systematic analysis of somatic mutations in phosphorylation signaling predicts novel cancer drivers J Reimand, GD Bader Molecular systems biology 9 (1), 637, 2013	275	2013
Topoisomerase II beta interacts with cohesin and CTCF at topological domain borders L Uusküla-Reimand, H Hou, P Samavarchi-Tehrani, MV Rudan, M Liang, ... Genome biology 17, 1-22, 2016	206	2016
Computational approaches to identify functional genetic variants in cancer genomes A Gonzalez-Perez, V Mustonen, B Reva, GRS Ritchie, P Creixell, ... Nature methods 10 (8), 723, 2013	182*	2013

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