Josh D. Neufeld
Josh D. Neufeld
Department of Biology, University of Waterloo
Verified email at uwaterloo.ca - Homepage
TitleCited byYear
PANDAseq: paired-end assembler for Illumina sequences
AP Masella, AK Bartram, JM Truszkowski, DG Brown, JD Neufeld
BMC Bioinformatics 13 (1), 31, 2012
11792012
Generation of multimillion-sequence 16S rRNA gene libraries from complex microbial communities by assembling paired-end Illumina reads
AK Bartram, MDJ Lynch, JC Stearns, G Moreno-Hagelsieb, JD Neufeld
Applied and Environmental Microbiology 77 (11), 3846-3852, 2011
6382011
A communal catalogue reveals Earth’s multiscale microbial diversity
LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ...
Nature 551 (7681), 457-463, 2017
4822017
Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications
P Yilmaz, R Kottmann, D Field, R Knight, JR Cole, L Amaral-Zettler, ...
Nature Biotechnology 29 (5), 415-420, 2011
3882011
Ecology and exploration of the rare biosphere
MDJ Lynch, JD Neufeld
Nature Reviews Microbiology 13 (4), 217-229, 2015
3612015
DNA stable-isotope probing
JD Neufeld, J Vohra, MG Dumont, T Lueders, M Manefield, MW Friedrich, ...
Nature Protocols 2 (4), 860-866, 2007
3452007
Bacterial biogeography of the human digestive tract
JC Stearns, MDJ Lynch, DB Senadheera, HC Tenenbaum, MB Goldberg, ...
Scientific Reports 1, 170, 2011
2922011
Who eats what, where and when? Isotope-labelling experiments are coming of age
JD Neufeld, M Wagner, JC Murrell
The ISME Journal 1 (2), 103-110, 2007
2252007
Methodological considerations for the use of stable isotope probing in microbial ecology
JD Neufeld, MG Dumont, J Vohra, JC Murrell
Microbial Ecology 53 (3), 435-442, 2007
2112007
Something from (almost) nothing: the impact of multiple displacement amplification on microbial ecology
EK Binga, RS Lasken, JD Neufeld
The ISME Journal 2 (3), 233-241, 2008
1792008
Transplantation of fecal microbiota from patients with irritable bowel syndrome alters gut function and behavior in recipient mice
G De Palma, MDJ Lynch, J Lu, VT Dang, Y Deng, J Jury, G Umeh, ...
Science Translational Medicine 9 (379), eaaf6397, 2017
1592017
Stable-isotope probing implicates Methylophaga spp and novel Gammaproteobacteria in marine methanol and methylamine metabolism
JD Neufeld, H Schäfer, MJ Cox, R Boden, IR McDonald, JC Murrell
The ISME Journal 1 (6), 480-491, 2007
1552007
Unexpectedly high bacterial diversity in arctic tundra relative to boreal forest soils, revealed by serial analysis of ribosomal sequence tags
JD Neufeld, WW Mohn
Applied and Environmental Microbiology 71 (10), 5710-5718, 2005
1512005
Evaluating bias of Illumina-based bacterial 16S rRNA gene profiles
K Kennedy, MW Hall, MDJ Lynch, G Moreno-Hagelsieb, JD Neufeld
Applied and Environmental Microbiology, 2014
1472014
Denaturing gradient gel electrophoresis (DGGE) for microbial community analysis
SJ Green, MB Leigh, JD Neufeld
Hydrocarbon and Lipid Microbiology Protocols, 77-99, 2015
1402015
Comparison of chloroform fumigation-extraction, phospholipid fatty acid, and DNA methods to determine microbial biomass in forest humus
SE Leckie, CE Prescott, SJ Grayston, JD Neufeld, WW Mohn
Soil Biology and Biochemistry 36 (3), 529-532, 2004
1312004
Revealing the uncultivated majority: combining DNA stable isotope probing, multiple displacement amplification and metagenomic analyses of uncultivated Methylocystis in acidic …
Y Chen, MG Dumont, JD Neufeld, L Bodrossy, N Stralis‐Pavese, ...
Environmental Microbiology 10 (10), 2609-2622, 2008
1112008
Marine methylotrophs revealed by stable isotope probing, multiple displacement amplification and metagenomics
JD Neufeld, Y Chen, MG Dumont, JC Murrell
Environmental Microbiology 10 (6), 1526-1535, 2008
1102008
Characterization of humus microbial communities in adjacent forest types that differ in nitrogen availability
SE Leckie, CE Prescott, SJ Grayston, JD Neufeld, WW Mohn
Microbial Ecology 48 (1), 29-40, 2004
1072004
Biogeography of anaerobic ammonia-oxidizing (anammox) bacteria
P Sonthiphand, MW Hall, JD Neufeld
Frontiers in Microbiology 5, 399, 2014
1062014
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Articles 1–20