Josh D. Neufeld
Josh D. Neufeld
Department of Biology, University of Waterloo
Verified email at uwaterloo.ca - Homepage
Title
Cited by
Cited by
Year
PANDAseq: paired-end assembler for Illumina sequences
AP Masella, AK Bartram, JM Truszkowski, DG Brown, JD Neufeld
BMC Bioinformatics 13 (1), 31, 2012
17882012
A communal catalogue reveals Earth’s multiscale microbial diversity
LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ...
Nature 551 (7681), 457-463, 2017
12652017
Generation of multimillion-sequence 16S rRNA gene libraries from complex microbial communities by assembling paired-end Illumina reads
AK Bartram, MDJ Lynch, JC Stearns, G Moreno-Hagelsieb, JD Neufeld
Applied and Environmental Microbiology 77 (11), 3846-3852, 2011
8102011
Ecology and exploration of the rare biosphere
MDJ Lynch, JD Neufeld
Nature Reviews Microbiology 13 (4), 217-229, 2015
6142015
Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications
P Yilmaz, R Kottmann, D Field, R Knight, JR Cole, L Amaral-Zettler, ...
Nature Biotechnology 29 (5), 415-420, 2011
5332011
DNA stable-isotope probing
JD Neufeld, J Vohra, MG Dumont, T Lueders, M Manefield, MW Friedrich, ...
Nature Protocols 2 (4), 860-866, 2007
4302007
Bacterial biogeography of the human digestive tract
JC Stearns, MDJ Lynch, DB Senadheera, HC Tenenbaum, MB Goldberg, ...
Scientific Reports 1, 170, 2011
3912011
Transplantation of fecal microbiota from patients with irritable bowel syndrome alters gut function and behavior in recipient mice
G De Palma, MDJ Lynch, J Lu, VT Dang, Y Deng, J Jury, G Umeh, ...
Science Translational Medicine 9 (379), eaaf6397, 2017
3192017
Who eats what, where and when? Isotope-labelling experiments are coming of age
JD Neufeld, M Wagner, JC Murrell
The ISME Journal 1 (2), 103-110, 2007
2672007
Methodological considerations for the use of stable isotope probing in microbial ecology
JD Neufeld, MG Dumont, J Vohra, JC Murrell
Microbial Ecology 53 (3), 435-442, 2007
2492007
Evaluating bias of Illumina-based bacterial 16S rRNA gene profiles
K Kennedy, MW Hall, MDJ Lynch, G Moreno-Hagelsieb, JD Neufeld
Applied and Environmental Microbiology, 2014
2222014
Something from (almost) nothing: the impact of multiple displacement amplification on microbial ecology
EK Binga, RS Lasken, JD Neufeld
The ISME Journal 2 (3), 233-241, 2008
2082008
Stable-isotope probing implicates Methylophaga spp and novel Gammaproteobacteria in marine methanol and methylamine metabolism
JD Neufeld, H Schäfer, MJ Cox, R Boden, IR McDonald, JC Murrell
The ISME Journal 1 (6), 480-491, 2007
1782007
Unexpectedly high bacterial diversity in arctic tundra relative to boreal forest soils, revealed by serial analysis of ribosomal sequence tags
JD Neufeld, WW Mohn
Applied and Environmental Microbiology 71 (10), 5710-5718, 2005
1752005
Denaturing gradient gel electrophoresis (DGGE) for microbial community analysis
SJ Green, MB Leigh, JD Neufeld
Hydrocarbon and lipid microbiology protocols, 77-99, 2015
1682015
Biogeography of anaerobic ammonia-oxidizing (anammox) bacteria
P Sonthiphand, MW Hall, JD Neufeld
Frontiers in Microbiology 5, 399, 2014
1522014
Comparison of chloroform fumigation-extraction, phospholipid fatty acid, and DNA methods to determine microbial biomass in forest humus
SE Leckie, CE Prescott, SJ Grayston, JD Neufeld, WW Mohn
Soil Biology and Biochemistry 36 (3), 529-532, 2004
1512004
Exploring links between pH and bacterial community composition in soils from the Craibstone Experimental Farm
AK Bartram, X Jiang, MDJ Lynch, AP Masella, GW Nicol, J Dushoff, ...
FEMS Microbiology Ecology 87 (2), 403-415, 2014
1432014
Cultivation and characterization of Candidatus Nitrosocosmicus exaquare, an ammonia-oxidizing archaeon from a municipal wastewater treatment system
LA Sauder, M Albertsen, K Engel, J Schwarz, PH Nielsen, M Wagner, ...
The ISME Journal 11 (5), 1142, 2017
1362017
Revealing the uncultivated majority: combining DNA stable isotope probing, multiple displacement amplification and metagenomic analyses of uncultivated Methylocystis in acidic …
Y Chen, MG Dumont, JD Neufeld, L Bodrossy, N Stralis‐Pavese, ...
Environmental Microbiology 10 (10), 2609-2622, 2008
1292008
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