Jia Zhe
Title
Cited by
Cited by
Year
Predicting protein–DNA binding free energy change upon missense mutations using modified MM/PBSA approach: SAMPDI webserver
Y Peng, L Sun, Z Jia, L Li, E Alexov
Bioinformatics 34 (5), 779-786, 2017
352017
Forces and Disease: Electrostatic force differences caused by mutations in kinesin motor domains can distinguish between disease-causing and non-disease-causing mutations
L Li, Z Jia, Y Peng, S Godar, I Getov, S Teng, J Alper, E Alexov
Scientific reports 7 (1), 1-12, 2017
34*2017
Exercise protects against chronic β-adrenergic remodeling of the heart by activation of endothelial nitric oxide synthase
L Yang, Z Jia, L Yang, M Zhu, J Zhang, J Liu, P Wu, W Tian, J Li, Z Qi, ...
PLoS One 9 (5), e96892, 2014
282014
CpG-ODN attenuates pathological cardiac hypertrophy and heart failure by activation of PI3Kα-Akt signaling
L Yang, X Cai, J Liu, Z Jia, J Jiao, J Zhang, C Li, J Li, XD Tang
PloS one 8 (4), e62373, 2013
262013
DelPhiForce web server: electrostatic forces and energy calculations and visualization
L Li, Z Jia, Y Peng, A Chakravorty, L Sun, E Alexov
Bioinformatics 33 (22), 3661-3663, 2017
212017
Treating ion distribution with Gaussian‐based smooth dielectric function in DelPhi
Z Jia, L Li, A Chakravorty, E Alexov
Journal of Computational Chemistry, 2017
202017
DelPhi Suite: New Developments and Review of Functionalities
C Li, Z Jia, A Chakravorty, S Pahari, Y Peng, S Basu, M Koirala, ...
Journal of Computational Chemistry., 2019
182019
A new DelPhi feature for modeling electrostatic potential around proteins: Role of bound ions and implications for Zeta-potential
A Chakravorty, Z Jia, L Li, E Alexov
Langmuir 33 (9), 2283-2295, 2017
122017
Gaussian-Based Smooth Dielectric Function: A Surface-Free Approach for Modeling Macromolecular Binding in Solvents
A Chakravorty, Z Jia, Y Peng, N Tajielyato, L Wang, E Alexov
Frontiers in molecular biosciences 5, 25, 2018
112018
Reproducing the ensemble average polar solvation energy of a protein from a single structure: gaussian-based smooth dielectric function for macromolecular modeling
A Chakravorty, Z Jia, L Li, S Zhao, E Alexov
Journal of chemical theory and computation 14 (2), 1020-1032, 2018
102018
A covert data transport protocol
Y Fu, Z Jia, L Yu, X Zhong, R Brooks
Malicious and Unwanted Software (MALWARE), 2016 11th International …, 2016
82016
Effects from metal ion in tumor endothelial marker 8 and anthrax protective antigen: BioLayer Interferometry experiment and molecular dynamics simulation study
Z Jia, C Ackroyd, T Han, V Agrawal, Y Liu, K Christensen, B Dominy
Journal of Computational Chemistry 38 (15), 1183-1190, 2017
62017
DFMD: fast and effective DelPhiForce steered molecular dynamics approach to model ligand approach toward a receptor: Application to spermine synthase enzyme
Y Peng, Y Yang, L Li, Z Jia, W Cao, E Alexov
Frontiers in molecular biosciences 6, 74, 2019
52019
Net motion of a charged macromolecule in a ratchet-slit
Z Wang, Z Jia, X He
Soft Matter 9 (46), 11107-11112, 2013
42013
Modeling electrostatics in molecular biology: A tutorial of DelPhi and associated resources [Article v1. 0]
SK Panday, MHB Shashikala, M Koirala, S Pahari, A Chakvorty, Y Peng, ...
Living Journal of Computational Molecular Science 1 (2), 10841, 2019
32019
The capricious electrostatic force: Revealing the signaling pathway in integrin α2-I domain
Z Jia, L Li, Y Peng, F Ding, E Alexov
Journal of Theoretical and Computational Chemistry 17 (03), 1840001, 2018
22018
Truth and lies of MM/GBSA
Z Jia, V Agrawal, Y Liu, T Han, B Dominy
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 251, 2016
12016
Molecular mechanics studies of protein signaling and conformation change
Z Jia
Clemson University, 2016
12016
Simulation study of integrin alpha-2 I domain activation
Z Jia, E Alexov
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 254, 2017
2017
Transition-state analysis of the uracil DNA glycosylase
Y Liu, T Han, Z Jia, V Agrawal, B Dominy
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 251, 2016
2016
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Articles 1–20