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Global identification of human transcribed sequences with genome tiling arrays
P Bertone, V Stolc, TE Royce, JS Rozowsky, AE Urban, X Zhu, JL Rinn, ...
Science 306 (5705), 2242-2246, 2004
13232004
Global analysis of protein phosphorylation in yeast
J Ptacek, G Devgan, G Michaud, H Zhu, X Zhu, J Fasolo, H Guo, G Jona, ...
Nature 438 (7068), 679-684, 2005
12402005
Annotation transfer between genomes: protein–protein interologs and protein–DNA regulogs
H Yu, NM Luscombe, HX Lu, X Zhu, Y Xia, JDJ Han, N Bertin, S Chung, ...
Genome research 14 (6), 1107-1118, 2004
6902004
Characterizing the genetic basis of transcriptome diversity through RNA-sequencing of 922 individuals
A Battle, S Mostafavi, X Zhu, JB Potash, MM Weissman, C McCormick, ...
Genome research 24 (1), 14-24, 2014
6572014
Getting connected: analysis and principles of biological networks
X Zhu, M Gerstein, M Snyder
Genes & development 21 (9), 1010-1024, 2007
6442007
Genomic analysis of essentiality within protein networks
H Yu, D Greenbaum, HX Lu, X Zhu, M Gerstein
TRENDS in Genetics 20 (6), 227-231, 2004
3822004
Regulation of gene expression by a metabolic enzyme
DA Hall, H Zhu, X Zhu, T Royce, M Gerstein, M Snyder
Science 306 (5695), 482-484, 2004
3242004
Type I interferon signaling genes in recurrent major depression: increased expression detected by whole-blood RNA sequencing
S Mostafavi, A Battle, X Zhu, JB Potash, MM Weissman, J Shi, K Beckman, ...
Molecular psychiatry 19 (12), 1267-1274, 2014
1802014
Severe acute respiratory syndrome diagnostics using a coronavirus protein microarray
H Zhu, S Hu, G Jona, X Zhu, N Kreiswirth, BM Willey, T Mazzulli, G Liu, ...
Proceedings of the National Academy of Sciences 103 (11), 4011-4016, 2006
1722006
Allele-specific expression reveals interactions between genetic variation and environment
DA Knowles, JR Davis, H Edgington, A Raj, MJ Favé, X Zhu, JB Potash, ...
Nature methods 14 (7), 699-702, 2017
1462017
Hypermethylation in the ZBTB20 gene is associated with major depressive disorder
MN Davies, L Krause, JT Bell, F Gao, KJ Ward, H Wu, H Lu, Y Liu, PC Tsai, ...
Genome biology 15, 1-12, 2014
1152014
TopNet: a tool for comparing biological sub‐networks, correlating protein properties with topological statistics
H Yu, X Zhu, D Greenbaum, J Karro, M Gerstein
Nucleic Acids Research 32 (1), 328-337, 2004
1112004
Twelve years of GWAS discoveries for osteoporosis and related traits: advances, challenges and applications
X Zhu, W Bai, H Zheng
Bone research 9 (1), 23, 2021
1062021
Impact of the X chromosome and sex on regulatory variation
KR Kukurba, P Parsana, B Balliu, KS Smith, Z Zappala, DA Knowles, ...
Genome research 26 (6), 768-777, 2016
1002016
Factors influencing peak bone mass gain
X Zhu, H Zheng
Frontiers of medicine 15 (1), 53-69, 2021
982021
Comprehensive, integrated, and phased whole-genome analysis of the primary ENCODE cell line K562
B Zhou, SS Ho, SU Greer, X Zhu, JM Bell, JG Arthur, N Spies, X Zhang, ...
Genome research 29 (3), 472-484, 2019
952019
Genome amplification and cellular senescence are hallmarks of human placenta development
P Velicky, G Meinhardt, K Plessl, S Vondra, T Weiss, P Haslinger, T Lendl, ...
PLoS genetics 14 (10), e1007698, 2018
812018
Normalizing RNA-sequencing data by modeling hidden covariates with prior knowledge
S Mostafavi, A Battle, X Zhu, AE Urban, D Levinson, SB Montgomery, ...
PloS one 8 (7), e68141, 2013
782013
ProCAT: a data analysis approach for protein microarrays
X Zhu, M Gerstein, M Snyder
Genome biology 7, 1-11, 2006
622006
Haplotype-resolved and integrated genome analysis of the cancer cell line HepG2
B Zhou, SS Ho, SU Greer, N Spies, JM Bell, X Zhang, X Zhu, JG Arthur, ...
Nucleic acids research 47 (8), 3846-3861, 2019
502019
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