Andrew Doxey

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Briallen LobbUniversity of WaterlooVerified email at uwaterloo.ca
Michael MansfieldOkinawa Institute of Science and TechnologyVerified email at oist.jp
Brendan McConkeyUniversity of WaterlooVerified email at uwaterloo.ca
Jeremy HirotaMcMaster University - Firestone Institute for Respiratory HealthVerified email at mcmaster.ca
Jennifer AguiarBioinformatician, The Hospital for Sick ChildrenVerified email at sickkids.ca
Josh D. NeufeldDepartment of Biology, University of WaterlooVerified email at uwaterloo.ca
Benjamin Jean-Marie TremblayPostdoc, The Sainsbury LaboratoryVerified email at tsl.ac.uk
Min DongHarvard Medical SchoolVerified email at childrens.harvard.edu
Arinjay BanerjeeVirologist, Vaccine and Infectious Disease Organization, University of SaskatchewanVerified email at usask.ca
Kjetil AskNovartis, Biomedical Research, DAx & Adjunct Associate Professor, McMaster UniversityVerified email at mcmaster.ca
Karen MossmanProfessor of Pathology and Molecular Medicine, McMaster UniversityVerified email at mcmaster.ca
sicai zhangHarvard medical schoolVerified email at childrens.harvard.edu
Martin StampfliProfessor, Pathology and Molecular Medicine, McMaster UniversityVerified email at mcmaster.ca
Matthew S MillerAssociate Professor, Department of Biochemistry and Biomedical Sciences, McMaster UniversityVerified email at mcmaster.ca
Trevor CharlesUniversity of Waterloo, Waterloo Centre for Microbial Research, Metagenom BioVerified email at uwaterloo.ca
Xin WeiPublic Health OntarioVerified email at oahpp.ca
Michael DJ LynchMetagenom Bio Life Science and Department of Biology, University of WaterlooVerified email at uwaterloo.ca
Gabriel Moreno-HagelsiebWilfrid Laurier UniversityVerified email at wlu.ca
Laura HugAssociate Professor, University of Waterloo Department of BiologyVerified email at uwaterloo.ca
Terence CapelliniAssociate Professor, Harvard UniversityVerified email at g.harvard.edu

Andrew Doxey

Associate Professor, University of Waterloo

Verified email at uwaterloo.ca - Homepage

Computational Biology Bioinformatics microbial genomics evolution toxins


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AnnoTree: visualization and exploration of a functionally annotated microbial tree of life K Mendler, H Chen, DH Parks, B Lobb, LA Hug, AC Doxey Nucleic acids research 47 (9), 4442-4448, 2019	258	2019
Functional Divergence in the Arabidopsis β-1,3-Glucanase Gene Family Inferred by Phylogenetic Reconstruction of Expression States AC Doxey, MWF Yaish, BA Moffatt, M Griffith, BJ McConkey Molecular biology and evolution 24 (4), 1045-1055, 2007	203	2007
Gene expression and in situ protein profiling of candidate SARS-CoV-2 receptors in human airway epithelial cells and lung tissue JA Aguiar, BJM Tremblay, MJ Mansfield, O Woody, B Lobb, A Banerjee, ... European Respiratory Journal 56 (3), 2020	188	2020
Aquatic metagenomes implicate Thaumarchaeota in global cobalamin production AC Doxey, DA Kurtz, MDJ Lynch, LA Sauder, JD Neufeld The ISME journal 9 (2), 461-471, 2015	188	2015
Metabolic flexibility determines human NK cell functional fate in the tumor microenvironment SM Poznanski, K Singh, TM Ritchie, JA Aguiar, IY Fan, AL Portillo, ... Cell Metabolism 33 (6), 1205-1220. e5, 2021	174	2021
Identification of a Botulinum Neurotoxin-like Toxin in a Commensal Strain of Enterococcus faecium S Zhang, F Lebreton, MJ Mansfield, SI Miyashita, J Zhang, ... Cell host & microbe 23 (2), 169-176. e6, 2018	158	2018
High functional diversity among Nitrospira populations that dominate rotating biological contactor microbial communities in a municipal wastewater treatment plant E Spasov, JM Tsuji, LA Hug, AC Doxey, LA Sauder, WJ Parker, ... The ISME Journal 14 (7), 1857-1872, 2020	125	2020
Ancient selection for derived alleles at a GDF5 enhancer influencing human growth and osteoarthritis risk TD Capellini, H Chen, J Cao, AC Doxey, AM Kiapour, M Schoor, ... Nature genetics 49 (8), 1202-1210, 2017	119	2017
Modular evolution and the origins of symmetry: reconstruction of a three-fold symmetric globular protein A Broom, AC Doxey, YD Lobsanov, LG Berthin, DR Rose, PL Howell, ... Structure 20 (1), 161-171, 2012	108	2012
An assessment of genome annotation coverage across the bacterial tree of life B Lobb, BJM Tremblay, G Moreno-Hagelsieb, AC Doxey Microbial Genomics 6 (3), e000341, 2020	107	2020
The skin microbiome of cohabiting couples AA Ross, AC Doxey, JD Neufeld MSystems 2 (4), 10.1128/msystems. 00043-17, 2017	103	2017
Cold-active winter rye glucanases with ice-binding capacity MWF Yaish, AC Doxey, BJ McConkey, BA Moffatt, M Griffith Plant physiology 141 (4), 1459-1472, 2006	103	2006
Unraveling the zoonotic origin and transmission of SARS-CoV-2 A Banerjee, AC Doxey, K Mossman, AT Irving Trends in ecology & evolution 36 (3), 180-184, 2021	102	2021
Botulinum neurotoxin homologs in non-Clostridium species MJ Mansfield, JB Adams, AC Doxey FEBS letters 589 (3), 342-348, 2015	100	2015
Ordered surface carbons distinguish antifreeze proteins and their ice-binding regions AC Doxey, MW Yaish, M Griffith, BJ McConkey Nature Biotechnology 24 (7), 852-855, 2006	97	2006
Prediction of molecular mimicry candidates in human pathogenic bacteria AC Doxey, BJ McConkey Virulence 4 (6), 453-466, 2013	85	2013
Metagenomic and chemical characterization of soil cobalamin production X Lu, KR Heal, AE Ingalls, AC Doxey, JD Neufeld The ISME journal 14 (1), 53-66, 2020	84	2020
Metagenomic data-mining reveals contrasting microbial populations responsible for trimethylamine formation in human gut and marine ecosystems E Jameson, AC Doxey, R Airs, KJ Purdy, JC Murrell, Y Chen Microbial genomics 2 (9), e000080, 2016	73	2016
Agricultural soil denitrifiers possess extensive nitrite reductase gene diversity S Coyotzi, AC Doxey, ID Clark, DR Lapen, P Van Cappellen, JD Neufeld Environmental microbiology 19 (3), 1189-1208, 2017	66	2017
Functional metagenomics reveals novel β-galactosidases not predictable from gene sequences J Cheng, T Romantsov, K Engel, AC Doxey, DR Rose, JD Neufeld, ... PLoS One 12 (3), e0172545, 2017	61	2017

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