| A Molecular Clutch Disables Flagella in the Bacillus subtilis Biofilm KM Blair, L Turner, JT Winkelman, HC Berg, DB Kearns science 320 (5883), 1636-1638, 2008 | 361 | 2008 |
| Stepwise promoter melting by bacterial RNA polymerase J Chen, C Chiu, S Gopalkrishnan, AY Chen, PDB Olinares, RM Saecker, ... Molecular cell 78 (2), 275-288. e6, 2020 | 100 | 2020 |
| 6S RNA mimics B-form DNA to regulate Escherichia coli RNA polymerase J Chen, KM Wassarman, S Feng, K Leon, A Feklistov, JT Winkelman, Z Li, ... Molecular cell 68 (2), 388-397. e6, 2017 | 79 | 2017 |
| Structures of the RNA polymerase-σ54 reveal new and conserved regulatory strategies Y Yang, VC Darbari, N Zhang, D Lu, R Glyde, YP Wang, JT Winkelman, ... Science 349 (6250), 882-885, 2015 | 79 | 2015 |
| Multiplexed protein-DNA cross-linking: Scrunching in transcription start site selection JT Winkelman, IO Vvedenskaya, Y Zhang, Y Zhang, JG Bird, DM Taylor, ... Science 351 (6277), 1090-1093, 2016 | 66 | 2016 |
| RemA is a DNA‐binding protein that activates biofilm matrix gene expression in Bacillus subtilis JT Winkelman, AC Bree, AR Bate, P Eichenberger, RL Gourse, ... Molecular microbiology 88 (5), 984-997, 2013 | 64 | 2013 |
| Crosslink mapping at amino acid-base resolution reveals the path of scrunched DNA in initial transcribing complexes JT Winkelman, BT Winkelman, J Boyce, MF Maloney, AY Chen, W Ross, ... Molecular cell 59 (5), 768-780, 2015 | 62 | 2015 |
| Open complex scrunching before nucleotide addition accounts for the unusual transcription start site of E. coli ribosomal RNA promoters JT Winkelman, P Chandrangsu, W Ross, RL Gourse Proceedings of the National Academy of Sciences 113 (13), E1787-E1795, 2016 | 57 | 2016 |
| RemA (YlzA) and RemB (YaaB) Regulate Extracellular Matrix Operon Expression and Biofilm Formation in Bacillus subtilis JT Winkelman, KM Blair, DB Kearns Journal of bacteriology 191 (12), 3981-3991, 2009 | 51 | 2009 |
| Open complex DNA scrunching: a key to transcription start site selection and promoter escape JT Winkelman, RL Gourse Bioessays 39 (2), 1600193, 2017 | 26 | 2017 |
| The mechanism of variability in transcription start site selection L Yu, JT Winkelman, C Pukhrambam, TR Strick, BE Nickels, RH Ebright Elife 6, e32038, 2017 | 25 | 2017 |
| XACT-seq comprehensively defines the promoter-position and promoter-sequence determinants for initial-transcription pausing JT Winkelman, C Pukhrambam, IO Vvedenskaya, Y Zhang, DM Taylor, ... Molecular cell 79 (5), 797-811. e8, 2020 | 21 | 2020 |
| Structural and mechanistic basis of reiterative transcription initiation Y Liu, L Yu, C Pukhrambam, JT Winkelman, E Firlar, JT Kaelber, Y Zhang, ... Proceedings of the National Academy of Sciences 119 (5), e2115746119, 2022 | 9* | 2022 |
| The transition from transcription initiation to transcription elongation: start-site selection, initial transcription, and promoter escape JT Winkelman, BE Nickels, RH Ebright | 7 | 2021 |
| Promoter-sequence determinants and structural basis of primer-dependent transcription initiation in Escherichia coli KS Skalenko, L Li, Y Zhang, IO Vvedenskaya, JT Winkelman, AL Cope, ... Proceedings of the National Academy of Sciences 118 (27), e2106388118, 2021 | 6 | 2021 |
| Structural and mechanistic basis of σ-dependent transcriptional pausing C Pukhrambam, V Molodtsov, M Kooshkbaghi, A Tareen, H Vu, ... Proceedings of the National Academy of Sciences 119 (23), e2201301119, 2022 | 5 | 2022 |
| A molecular clutch disables flagella in the KM Blair, L Turner, JT Winkelman, HC Berg, DB Kearns Bacillus subtilis, 1636-1638, 0 | 2 | |
| Combinatorial control of biofilm development by quorum-sensing and nutrient-sensing regulators in Pseudomonas aeruginosa G Chen, G Fanouraki, AA Rangarajan, BT Winkelman, JT Winkelman, ... bioRxiv, 2022.09. 27.509822, 2022 | 1 | 2022 |
| Mapping the path of DNA in transcription initiation intermediates JT Winkelman The University of Wisconsin-Madison, 2015 | 1 | 2015 |
| The mechanism of transcription start site selection L Yu, JT Winkelman, C Pukhrambam, TR Strick, BE Nickels, RH Ebright bioRxiv, 156877, 2017 | | 2017 |
