| Skyline: an open source document editor for creating and analyzing targeted proteomics experiments B MacLean, DM Tomazela, N Shulman, M Chambers, GL Finney, ... Bioinformatics 26 (7), 966-968, 2010 | 4727 | 2010 |
| A cross-platform toolkit for mass spectrometry and proteomics MC Chambers, B Maclean, R Burke, D Amodei, DL Ruderman, ... Nature biotechnology 30 (10), 918-920, 2012 | 3406 | 2012 |
| Semi-supervised learning for peptide identification from shotgun proteomics datasets L Käll, JD Canterbury, J Weston, WS Noble, MJ MacCoss Nature methods 4 (11), 923-925, 2007 | 2363 | 2007 |
| Aminoglycoside antibiotics induce bacterial biofilm formation LR Hoffman, DA D'Argenio, MJ MacCoss, Z Zhang, RA Jones, SI Miller Nature 436 (7054), 1171-1175, 2005 | 1631 | 2005 |
| Integrative Analysis of the Caenorhabditis elegans Genome by the modENCODE Project MB Gerstein, ZJ Lu, EL Van Nostrand, C Cheng, BI Arshinoff, T Liu, ... Science 330 (6012), 1775-1787, 2010 | 1133 | 2010 |
| An expansive human regulatory lexicon encoded in transcription factor footprints S Neph, J Vierstra, AB Stergachis, AP Reynolds, E Haugen, B Vernot, ... Nature 489 (7414), 83-90, 2012 | 962 | 2012 |
| How many human proteoforms are there? R Aebersold, JN Agar, IJ Amster, MS Baker, CR Bertozzi, ES Boja, ... Nature chemical biology 14 (3), 206-214, 2018 | 862 | 2018 |
| A method for the comprehensive proteomic analysis of membrane proteins CC Wu, MJ MacCoss, KE Howell, JR Yates III Nature biotechnology 21 (5), 532-538, 2003 | 847 | 2003 |
| Assigning significance to peptides identified by tandem mass spectrometry using decoy databases L Käll, JD Storey, MJ MacCoss, WS Noble Journal of proteome research 7 (01), 29-34, 2008 | 767 | 2008 |
| Molecular architecture and assembly of the DDB1–CUL4A ubiquitin ligase machinery S Angers, T Li, X Yi, MJ MacCoss, RT Moon, N Zheng Nature 443 (7111), 590-593, 2006 | 765 | 2006 |
| Shotgun identification of protein modifications from protein complexes and lens tissue MJ MacCoss, WH McDonald, A Saraf, R Sadygov, JM Clark, JJ Tasto, ... Proceedings of the National Academy of Sciences 99 (12), 7900-7905, 2002 | 737 | 2002 |
| The ProteomeXchange consortium in 2020: enabling ‘big data’approaches in proteomics EW Deutsch, N Bandeira, V Sharma, Y Perez-Riverol, JJ Carver, ... Nucleic acids research 48 (D1), D1145-D1152, 2020 | 699 | 2020 |
| Using i RT, a normalized retention time for more targeted measurement of peptides C Escher, L Reiter, B MacLean, R Ossola, F Herzog, J Chilton, ... Proteomics 12 (8), 1111-1121, 2012 | 632 | 2012 |
| The Skyline ecosystem: Informatics for quantitative mass spectrometry proteomics LK Pino, BC Searle, JG Bollinger, B Nunn, B MacLean, MJ MacCoss Mass spectrometry reviews 39 (3), 229-244, 2020 | 615 | 2020 |
| Overexpression of catalase targeted to mitochondria attenuates murine cardiac aging DF Dai, LF Santana, M Vermulst, DM Tomazela, MJ Emond, MJ MacCoss, ... Circulation 119 (21), 2789-2797, 2009 | 543 | 2009 |
| Metabolic labeling of mammalian organisms with stable isotopes for quantitative proteomic analysis CC Wu, MJ MacCoss, KE Howell, DE Matthews, JR Yates Analytical chemistry 76 (17), 4951-4959, 2004 | 511 | 2004 |
| Wilms tumor suppressor WTX negatively regulates WNT/ß-catenin signaling MB Major, ND Camp, JD Berndt, XH Yi, SJ Goldenberg, C Hubbert, ... science, 2007 | 506 | 2007 |
| Platform-independent and label-free quantitation of proteomic data using MS1 extracted ion chromatograms in skyline: application to protein acetylation and phosphorylation B Schilling, MJ Rardin, BX MacLean, AM Zawadzka, BE Frewen, ... Molecular & Cellular Proteomics 11 (5), 202-214, 2012 | 499 | 2012 |
| Probability-based validation of protein identifications using a modified SEQUEST algorithm MJ MacCoss, CC Wu, JR Yates Analytical chemistry 74 (21), 5593-5599, 2002 | 487 | 2002 |
| The PINK1–Parkin pathway promotes both mitophagy and selective respiratory chain turnover in vivo ES Vincow, G Merrihew, RE Thomas, NJ Shulman, RP Beyer, ... Proceedings of the National Academy of Sciences 110 (16), 6400-6405, 2013 | 485 | 2013 |
Brendan MacLeanUniversity of WashingtonVerified email at uw.edu
