Antti Karkman
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Antibiotic-resistance genes in waste water
A Karkman, TT Do, F Walsh, MPJ Virta
Trends in microbiology 26 (3), 220-228, 2018
Tetracycline resistance genes persist at aquaculture farms in the absence of selection pressure
M Tamminen, A Karkman, A Lõhmus, WI Muziasari, H Takasu, S Wada, ...
Environmental science & technology 45 (2), 386-391, 2011
Fecal pollution can explain antibiotic resistance gene abundances in anthropogenically impacted environments
A Karkman, K Pärnänen, DGJ Larsson
Nature communications 10 (1), 1-8, 2019
Antibiotic resistance in European wastewater treatment plants mirrors the pattern of clinical antibiotic resistance prevalence
KMM Pärnänen, C Narciso-da-Rocha, D Kneis, TU Berendonk, D Cacace, ...
Science advances 5 (3), eaau9124, 2019
High-throughput quantification of antibiotic resistance genes from an urban wastewater treatment plant
A Karkman, TA Johnson, C Lyra, RD Stedtfeld, M Tamminen, JM Tiedje, ...
FEMS microbiology ecology 92 (3), fiw014, 2016
Abundances of tetracycline, sulphonamide and beta-lactam antibiotic resistance genes in conventional wastewater treatment plants (WWTPs) with different waste load
M Laht, A Karkman, V Voolaid, C Ritz, T Tenson, M Virta, V Kisand
PloS one 9 (8), e103705, 2014
Maternal gut and breast milk microbiota affect infant gut antibiotic resistome and mobile genetic elements
K Pärnänen, A Karkman, J Hultman, C Lyra, J Bengtsson-Palme, ...
Nature communications 9 (1), 1-11, 2018
Aquaculture changes the profile of antibiotic resistance and mobile genetic element associated genes in Baltic Sea sediments
WI Muziasari, K Pärnänen, TA Johnson, C Lyra, A Karkman, RD Stedtfeld, ...
FEMS microbiology ecology 92 (4), fiw052, 2016
Sulphonamide and trimethoprim resistance genes persist in sediments at Baltic Sea aquaculture farms but are not detected in the surrounding environment
WI Muziasari, S Managaki, K Pärnänen, A Karkman, C Lyra, M Tamminen, ...
PLoS One 9 (3), e92702, 2014
Seasonality of antibiotic prescriptions for outpatients and resistance genes in sewers and wastewater treatment plant outflow
S Caucci, A Karkman, D Cacace, M Rybicki, P Timpel, V Voolaid, R Gurke, ...
FEMS microbiology ecology 92 (5), fiw060, 2016
Influence of manure application on the environmental resistome under Finnish agricultural practice with restricted antibiotic use
J Muurinen, R Stedtfeld, A Karkman, K Parnanen, J Tiedje, M Virta
Environmental science & technology 51 (11), 5989-5999, 2017
Patterns in the skin microbiota differ in children and teenagers between rural and urban environments
J Lehtimäki, A Karkman, T Laatikainen, L Paalanen, L von Hertzen, ...
Scientific Reports 7 (1), 1-11, 2017
Host range of antibiotic resistance genes in wastewater treatment plant influent and effluent
J Hultman, M Tamminen, K Pärnänen, J Cairns, A Karkman, M Virta
FEMS microbiology ecology 94 (4), fiy038, 2018
Significant disparities in allergy prevalence and microbiota between the young people in Finnish and Russian Karelia
L Ruokolainen, L Paalanen, A Karkman, T Laatikainen, L Von Hertzen, ...
Clinical & Experimental Allergy 47 (5), 665-674, 2017
The ecology of human microbiota: dynamics and diversity in health and disease
A Karkman, J Lehtimäki, L Ruokolainen
Annals of the New York Academy of Sciences 1399 (1), 78-92, 2017
“Every gene is everywhere but the environment selects”: global geolocalization of gene sharing in environmental samples through network analysis
M Fondi, A Karkman, MV Tamminen, E Bosi, M Virta, R Fani, E Alm, ...
Genome biology and evolution 8 (5), 1388-1400, 2016
Cold temperature decreases bacterial species richness in nitrogen‐removing bioreactors treating inorganic mine waters
A Karkman, K Mattila, M Tamminen, M Virta
Biotechnology and bioengineering 108 (12), 2876-2883, 2011
Differences in bacterial community composition in Baltic Sea sediment in response to fish farming
M Tamminen, A Karkman, J Corander, L Paulin, M Virta
Aquaculture 313 (1-4), 15-23, 2011
Holistic view on health: two protective layers of biodiversity
L Ruokolainen, J Lehtimäki, A Karkman, T Haahtela, L von Hertzen, ...
Annales Zoologici Fennici 54 (1–4), 39-49, 2017
Evaluating the mobility potential of antibiotic resistance genes in environmental resistomes without metagenomics
K Pärnänen, A Karkman, M Tamminen, C Lyra, J Hultman, L Paulin, ...
Scientific reports 6 (1), 1-9, 2016
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