Donald Jacobs
Title
Cited by
Cited by
Year
Protein flexibility predictions using graph theory
DJ Jacobs, AJ Rader, LA Kuhn, MF Thorpe
Proteins: Structure, Function, and Bioinformatics 44 (2), 150-165, 2001
8242001
Generic rigidity percolation: the pebble game
DJ Jacobs, MF Thorpe
Physical review letters 75 (22), 4051, 1995
5171995
An algorithm for two-dimensional rigidity percolation: the pebble game
DJ Jacobs, B Hendrickson
Journal of Computational Physics 137 (2), 346-365, 1997
4241997
Principal component analysis: a method for determining the essential dynamics of proteins
CC David, DJ Jacobs
Protein dynamics, 193-226, 2014
3422014
Self-organization in network glasses
MF Thorpe, DJ Jacobs, MV Chubynsky, JC Phillips
Journal of Non-Crystalline Solids 266, 859-866, 2000
3152000
Generic rigidity percolation in two dimensions
DJ Jacobs, MF Thorpe
Physical Review E 53 (4), 3682, 1996
2311996
Protein flexibility and dynamics using constraint theory
MF Thorpe, M Lei, AJ Rader, DJ Jacobs, LA Kuhn
Journal of Molecular Graphics and Modelling 19 (1), 60-69, 2001
1512001
Generic rigidity in three-dimensional bond-bending networks
DJ Jacobs
Journal of Physics A: Mathematical and General 31 (31), 6653, 1998
1231998
A flexible approach for understanding protein stability
DR Livesay, S Dallakyan, GG Wood, DJ Jacobs
FEBS letters 576 (3), 468-476, 2004
842004
Floppy modes and the free energy: Rigidity and connectivity percolation on Bethe lattices
PM Duxbury, DJ Jacobs, MF Thorpe, C Moukarzel
Physical Review E 59 (2), 2084, 1999
831999
Extending the fast multipole method to charges inside or outside a dielectric sphere
W Cai, S Deng, D Jacobs
Journal of Computational Physics 223 (2), 846-864, 2007
812007
Flexible and rigid regions in proteins
DJ Jacobs, LA Kuhn, MF Thorpe
Rigidity theory and applications, 357-384, 2002
812002
Network rigidity at finite temperature: relationships between thermodynamic stability, the nonadditivity of entropy, and cooperativity in molecular systems
DJ Jacobs, S Dallakyan, GG Wood, A Heckathorne
Physical Review E 68 (6), 061109, 2003
722003
Anomalous diffusion: a dynamic perspective
R Muralidhar, D Ramkrishna, H Nakanishi, D Jacobs
Physica A: Statistical Mechanics and its Applications 167 (2), 539-559, 1990
711990
Structural rigidity in the capsid assembly of cowpea chlorotic mottle virus
BM Hespenheide, DJ Jacobs, MF Thorpe
Journal of Physics: Condensed Matter 16 (44), S5055, 2004
682004
Conserved quantitative stability/flexibility relationships (QSFR) in an orthologous RNase H pair
DR Livesay, DJ Jacobs
Proteins: Structure, Function, and Bioinformatics 62 (1), 130-143, 2006
642006
Elucidating protein thermodynamics from the three-dimensional structure of the native state using network rigidity
DJ Jacobs, S Dallakyan
Biophysical journal 88 (2), 903-915, 2005
582005
Generic rigidity of network glasses
MF Thorpe, DJ Jacobs, NV Chubynsky, AJ Rader
Rigidity theory and applications, 239-277, 2002
562002
An image-based reaction field method for electrostatic interactions in molecular dynamics simulations of aqueous solutions
Y Lin, A Baumketner, S Deng, Z Xu, D Jacobs, W Cai
The Journal of chemical physics 131 (15), 10B608, 2009
552009
New insight into long‐range nonadditivity within protein double‐mutant cycles
AY Istomin, MM Gromiha, OK Vorov, DJ Jacobs, DR Livesay
Proteins: Structure, Function, and Bioinformatics 70 (3), 915-924, 2008
532008
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