|Next‐generation sequencing technologies for environmental DNA research|
S Shokralla, JL Spall, JF Gibson, M Hajibabaei
Molecular ecology 21 (8), 1794-1805, 2012
|Environmental barcoding: a next-generation sequencing approach for biomonitoring applications using river benthos|
M Hajibabaei, S Shokralla, X Zhou, GAC Singer, DJ Baird
PLoS one 6 (4), e17497, 2011
|A pyrosequencing-tailored nucleotide barcode design unveils opportunities for large-scale sample multiplexing|
P Parameswaran, R Jalili, L Tao, S Shokralla, B Gharizadeh, M Ronaghi, ...
Nucleic acids research 35 (19), e130, 2007
|Simultaneous assessment of the macrobiome and microbiome in a bulk sample of tropical arthropods through DNA metasystematics|
J Gibson, S Shokralla, TM Porter, I King, S van Konynenburg, DH Janzen, ...
Proceedings of the National Academy of Sciences 111 (22), 8007-8012, 2014
|Next‐generation DNA barcoding: using next‐generation sequencing to enhance and accelerate DNA barcode capture from single specimens|
S Shokralla, JF Gibson, H Nikbakht, DH Janzen, W Hallwachs, ...
Molecular ecology resources 14 (5), 892-901, 2014
|Assessing biodiversity of a freshwater benthic macroinvertebrate community through non-destructive environmental barcoding of DNA from preservative ethanol|
M Hajibabaei, JL Spall, S Shokralla, S van Konynenburg
BMC ecology 12 (1), 1-10, 2012
|Altered intestinal microbiota–host mitochondria crosstalk in new onset Crohn’s disease|
W Mottawea, CK Chiang, M Mühlbauer, AE Starr, J Butcher, T Abujamel, ...
Nature communications 7 (1), 1-14, 2016
|Massively parallel multiplex DNA sequencing for specimen identification using an Illumina MiSeq platform|
S Shokralla, TM Porter, JF Gibson, R Dobosz, DH Janzen, W Hallwachs, ...
Scientific reports 5 (1), 1-7, 2015
|A DNA mini-barcoding system for authentication of processed fish products|
S Shokralla, RS Hellberg, SM Handy, I King, M Hajibabaei
Scientific Reports 5 (1), 1-11, 2015
|Large-scale biomonitoring of remote and threatened ecosystems via high-throughput sequencing|
JF Gibson, S Shokralla, C Curry, DJ Baird, WA Monk, I King, M Hajibabaei
PloS one 10 (10), e0138432, 2015
|DNA barcodes for everyday life: routine authentication of natural health products|
LJ Wallace, SMAL Boilard, SHC Eagle, JL Spall, S Shokralla, ...
Food Research International 49 (1), 446-452, 2012
|Direct PCR amplification and sequencing of specimens' DNA from preservative ethanol|
S Shokralla, GAC Singer, M Hajibabaei
BioTechniques 48 (3), 305-306, 2010
|Whole-genome sequencing of the efficient industrial fuel-ethanol fermentative Saccharomyces cerevisiae strain CAT-1|
F Babrzadeh, R Jalili, C Wang, S Shokralla, S Pierce, A Robinson-Mosher, ...
Molecular genetics and genomics 287 (6), 485-494, 2012
|Pyrosequencing for mini-barcoding of fresh and old museum specimens|
S Shokralla, X Zhou, DH Janzen, W Hallwachs, JF Landry, LM Jacobus, ...
PloS one 6 (7), e21252, 2011
|Large-scale monitoring of plants through environmental DNA metabarcoding of soil: recovery, resolution, and annotation of four DNA markers|
NA Fahner, S Shokralla, DJ Baird, M Hajibabaei
PloS one 11 (6), e0157505, 2016
|Performance of amplicon and shotgun sequencing for accurate biomass estimation in invertebrate community samples|
I Bista, GR Carvalho, M Tang, K Walsh, X Zhou, M Hajibabaei, ...
Molecular Ecology Resources 18 (5), 1020-1034, 2018
|Enhancing mint and basil oil composition and antibacterial activity using seaweed extracts|
HO Elansary, K Yessoufou, S Shokralla, EA Mahmoud, ...
Industrial Crops and Products 92, 50-56, 2016
|Identifying North American freshwater invertebrates using DNA barcodes: are existing COI sequence libraries fit for purpose?|
CJ Curry, JF Gibson, S Shokralla, M Hajibabaei, DJ Baird
Freshwater Science 37 (1), 178-189, 2018
|Rapid and accurate taxonomic classification of insect (class Insecta) cytochrome c oxidase subunit 1 (COI) DNA barcode sequences using a naïve Bayesian classifier|
TM Porter, JF Gibson, S Shokralla, DJ Baird, GB Golding, M Hajibabaei
Molecular Ecology Resources 14 (5), 929-942, 2014
|Quorum sensing inhibiting activity of Streptomyces coelicoflavus isolated from soil|
R Hassan, MI Shaaban, FM Abdel Bar, AM El-Mahdy, S Shokralla
Frontiers in microbiology 7, 659, 2016