Michael Menden
Michael Menden
Junior Group Leader, Institute of Computational Biology, Helmholtz Zentrum München
Verified email at helmholtz-muenchen.de - Homepage
Title
Cited by
Cited by
Year
A landscape of pharmacogenomic interactions in cancer
F Iorio, TA Knijnenburg, DJ Vis, GR Bignell, MP Menden, M Schubert, ...
Cell 166 (3), 740-754, 2016
7992016
The IntAct molecular interaction database in 2010
B Aranda, P Achuthan, Y Alam-Faruque, I Armean, A Bridge, C Derow, ...
Nucleic acids research 38 (suppl_1), D525-D531, 2010
7402010
A community effort to assess and improve drug sensitivity prediction algorithms
JC Costello, LM Heiser, E Georgii, M Gönen, MP Menden, NJ Wang, ...
Nature biotechnology 32 (12), 1202-1212, 2014
4912014
Machine learning prediction of cancer cell sensitivity to drugs based on genomic and chemical properties
MP Menden, F Iorio, M Garnett, U McDermott, CH Benes, PJ Ballester, ...
PLoS one 8 (4), e61318, 2013
3072013
A community computational challenge to predict the activity of pairs of compounds
M Bansal, J Yang, C Karan, MP Menden, JC Costello, H Tang, G Xiao, ...
Nature biotechnology 32 (12), 1213-1222, 2014
1832014
Transcriptional data: a new gateway to drug repositioning?
F Iorio, T Rittman, H Ge, M Menden, J Saez-Rodriguez
Drug discovery today 18 (7-8), 350-357, 2013
1832013
Pharmacogenomic agreement between two cancer cell line data sets
Cancer Cell Line Encyclopedia Consortium, ...
Nature 528 (7580), 84, 2015
1712015
Prediction of human population responses to toxic compounds by a collaborative competition
F Eduati, LM Mangravite, T Wang, H Tang, JC Bare, R Huang, T Norman, ...
Nature biotechnology 33 (9), 933-940, 2015
922015
Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen
MP Menden, D Wang, MJ Mason, B Szalai, KC Bulusu, Y Guan, T Yu, ...
Nature communications 10 (1), 1-17, 2019
782019
Adaptive informatics for multifactorial and high-content biological data
BL Millard, M Niepel, MP Menden, JL Muhlich, PK Sorger
Nature methods 8 (6), 487-492, 2011
692011
DREAMTools: a Python package for scoring collaborative challenges
T Cokelaer, M Bansal, C Bare, E Bilal, BM Bot, EC Neto, F Eduati, ...
F1000Research 4, 2015
212015
GDSCTools for mining pharmacogenomic interactions in cancer
T Cokelaer, E Chen, F Iorio, MP Menden, H Lightfoot, J Saez-Rodriguez, ...
Bioinformatics 34 (7), 1226-1228, 2018
192018
Applying synergy metrics to combination screening data: agreements, disagreements and pitfalls
AHC Vlot, N Aniceto, MP Menden, G Ulrich-Merzenich, A Bender
Drug discovery today 24 (12), 2286-2298, 2019
172019
The germline genetic component of drug sensitivity in cancer cell lines
MP Menden, FP Casale, J Stephan, GR Bignell, F Iorio, U McDermott, ...
Nature communications 9 (1), 1-8, 2018
162018
A cancer pharmacogenomic screen powering crowd-sourced advancement of drug combination prediction
MP Menden, D Wang, Y Guan, MJ Mason, B Szalai, KC Bulusu, T Yu, ...
BioRxiv, 200451, 2018
152018
A community challenge for inferring genetic predictors of gene essentialities through analysis of a functional screen of cancer cell lines
M Gönen, BA Weir, GS Cowley, F Vazquez, Y Guan, A Jaiswal, ...
Cell systems 5 (5), 485-497. e3, 2017
142017
NCI DREAM Community, Collins JJ, Gallahan D, Singer D, Saez-Rodriguez J, Kaski S, Gray JW, Stolovitzky G. A community effort to assess and improve drug sensitivity prediction …
JC Costello, LM Heiser, E Georgii, M Gönen, MP Menden, NJ Wang, ...
Nat Biotechnol 32 (12), 1202-12, 2014
132014
Quantitative proteome landscape of the NCI-60 cancer cell lines
T Guo, A Luna, VN Rajapakse, CC Koh, Z Wu, W Liu, Y Sun, H Gao, ...
Iscience 21, 664-680, 2019
62019
Community assessment of cancer drug combination screens identifies strategies for synergy prediction
MP Menden, D Wang, Y Guan, M Mason, B Szalai, KC Bulusu, T Yu, ...
bioRxiv, 200451, 2017
62017
Defining subpopulations of differential drug response to reveal novel target populations
N Keshava, TS Toh, H Yuan, B Yang, MP Menden, D Wang
NPJ systems biology and applications 5 (1), 1-11, 2019
52019
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Articles 1–20