|A proteome-scale map of the human interactome network|
T Rolland, M Taşan, B Charloteaux, SJ Pevzner, Q Zhong, N Sahni, S Yi, ...
Cell 159 (5), 1212-1226, 2014
|Uncovering disease-disease relationships through the incomplete interactome|
J Menche, A Sharma, M Kitsak, SD Ghiassian, M Vidal, J Loscalzo, ...
Science 347 (6224), 1257601, 2015
|Human symptoms–disease network|
XZ Zhou, J Menche, AL Barabási, A Sharma
Nature communications 5, 4212, 2014
|Canonical Genetic Signatures of the Adult Human Brain|
M Hawrylycz, JA Miller, V Menon, D Feng, T Dolbeare, ...
Nature Neuroscience, 2015
|Network-based in silico drug efficacy screening|
E Guney, J Menche, M Vidal, AL Barábasi
Nature communications 7, 10331, 2016
|A DIseAse MOdule Detection (DIAMOnD) algorithm derived from a systematic analysis of connectivity patterns of disease proteins in the human interactome|
SD Ghiassian, J Menche, AL Barabási
PLoS computational biology 11 (4), e1004120, 2015
|A disease module in the interactome explains disease heterogeneity, drug response and captures novel pathways and genes in asthma|
A Sharma, J Menche, CC Huang, T Ort, X Zhou, M Kitsak, N Sahni, ...
Human molecular genetics 24 (11), 3005-3020, 2015
|Asymptotic properties of degree-correlated scale-free networks|
J Menche, A Valleriani, R Lipowsky
Physical review E 81 (4), 046103, 2010
|Tissue specificity of human disease module|
M Kitsak, A Sharma, J Menche, E Guney, SD Ghiassian, J Loscalzo, ...
Scientific reports 6, 35241, 2016
|Endophenotype network models: common core of complex diseases|
SD Ghiassian, J Menche, DI Chasman, F Giulianini, R Wang, P Ricchiuto, ...
Scientific reports 6, 27414, 2016
|Systems Medicine: from molecular features and models to the clinic in COPD|
D Gomez-Cabrero, J Menche, I Cano, I Abugessaisa, ...
Journal of translational medicine 12 (2), S4, 2014
|Network-based analysis of genome wide association data provides novel candidate genes for lipid and lipoprotein traits|
A Sharma, N Gulbahce, SJ Pevzner, J Menche, C Ladenvall, L Folkersen, ...
Molecular & Cellular Proteomics 12 (11), 3398-3408, 2013
|Two particles with bistable coupling on a ratchet|
J Menche, L Schimansky-Geier
Physics Letters A 359 (2), 90-98, 2006
|An inter‐species protein–protein interaction network across vast evolutionary distance|
Q Zhong, SJ Pevzner, T Hao, Y Wang, R Mosca, J Menche, M Taipale, ...
Molecular systems biology 12 (4), 2016
|A diVIsive Shuffling Approach (VIStA) for gene expression analysis to identify subtypes in Chronic Obstructive Pulmonary Disease|
J Menche, A Sharma, MH Cho, RJ Mayer, SI Rennard, B Celli, BE Miller, ...
BMC Systems Biology 8 (2), S8, 2014
|Interactome-based approaches to human disease|
M Caldera, P Buphamalai, F Müller, J Menche
Current Opinion in Systems Biology 3, 88-94, 2017
|Integrating personalized gene expression profiles into predictive disease-associated gene pools|
J Menche, E Guney, A Sharma, PJ Branigan, MJ Loza, F Baribaud, ...
NPJ Systems Biology and Applications 3 (1), 10, 2017
|From comorbidities of chronic obstructive pulmonary disease to identification of shared molecular mechanisms by data integration|
D Gomez-Cabrero, J Menche, C Vargas, I Cano, D Maier, AL Barabási, ...
BMC bioinformatics 17 (15), 441, 2016
|A combinatorial screen of the CLOUD uncovers a synergy targeting the androgen receptor|
MP Licciardello, A Ringler, P Markt, F Klepsch, CH Lardeau, S Sdelci, ...
Nature chemical biology 13 (7), 771, 2017
|Non-classical monocytes as mediators of tissue destruction in arthritis|
A Puchner, V Saferding, M Bonelli, Y Mikami, M Hofmann, JS Brunner, ...
Annals of the rheumatic diseases 77 (10), 1490-1497, 2018