Frank DiMaio
Frank DiMaio
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High-resolution comparative modeling with RosettaCM
Y Song, F DiMaio, RYR Wang, D Kim, C Miles, TJ Brunette, J Thompson, ...
Structure 21 (10), 1735-1742, 2013
Crystal structure of a monomeric retroviral protease solved by protein folding game players
F Khatib, F DiMaio, S Cooper, M Kazmierczyk, M Gilski, S Krzywda, ...
Nature structural & molecular biology 18 (10), 1175-1177, 2011
The Rosetta all-atom energy function for macromolecular modeling and design
RF Alford, A Leaver-Fay, JR Jeliazkov, MJ O’Meara, FP DiMaio, H Park, ...
Journal of chemical theory and computation 13 (6), 3031-3048, 2017
Structure prediction for CASP8 with all‐atom refinement using Rosetta
S Raman, R Vernon, J Thompson, M Tyka, R Sadreyev, J Pei, D Kim, ...
Proteins: Structure, Function, and Bioinformatics 77 (S9), 89-99, 2009
EMRinger: side chain–directed model and map validation for 3D cryo-electron microscopy
BA Barad, N Echols, RYR Wang, Y Cheng, F DiMaio, PD Adams, ...
Nature methods 12 (10), 943-946, 2015
Cryo-electron microscopy structure of a coronavirus spike glycoprotein trimer
AC Walls, MA Tortorici, BJ Bosch, B Frenz, PJM Rottier, F DiMaio, FA Rey, ...
Nature 531 (7592), 114-117, 2016
Atomic-accuracy models from 4.5-Ĺ cryo-electron microscopy data with density-guided iterative local refinement
F DiMaio, Y Song, X Li, MJ Brunner, C Xu, V Conticello, E Egelman, ...
Nature methods 12 (4), 361-365, 2015
Refinement of protein structures into low-resolution density maps using rosetta
F DiMaio, MD Tyka, ML Baker, W Chiu, D Baker
Journal of molecular biology 392 (1), 181-190, 2009
Glycan shield and epitope masking of a coronavirus spike protein observed by cryo-electron microscopy
AC Walls, MA Tortorici, B Frenz, J Snijder, W Li, FA Rey, F DiMaio, ...
Nature structural & molecular biology 23 (10), 899, 2016
Alternate states of proteins revealed by detailed energy landscape mapping
MD Tyka, DA Keedy, I André, F DiMaio, Y Song, DC Richardson, ...
Journal of molecular biology 405 (2), 607-618, 2011
Improved molecular replacement by density-and energy-guided protein structure optimization
F DiMaio, TC Terwilliger, RJ Read, A Wlodawer, G Oberdorfer, U Wagner, ...
Nature 473 (7348), 540-543, 2011
High thermodynamic stability of parametrically designed helical bundles
PS Huang, G Oberdorfer, C Xu, XY Pei, BL Nannenga, JM Rogers, ...
science 346 (6208), 481-485, 2014
De novo design of protein homo-oligomers with modular hydrogen-bond network–mediated specificity
SE Boyken, Z Chen, B Groves, RA Langan, G Oberdorfer, A Ford, ...
Science 352 (6286), 680-687, 2016
Design of ordered two-dimensional arrays mediated by noncovalent protein-protein interfaces
S Gonen, F DiMaio, T Gonen, D Baker
Science 348 (6241), 1365-1368, 2015
Structure of the type VI secretion system contractile sheath
M Kudryashev, RYR Wang, M Brackmann, S Scherer, T Maier, D Baker, ...
Cell 160 (5), 952-962, 2015
Automated structure refinement of macromolecular assemblies from cryo-EM maps using Rosetta
RYR Wang, Y Song, BA Barad, Y Cheng, JS Fraser, F DiMaio
Elife 5, e17219, 2016
Structural basis for scaffolding-mediated assembly and maturation of a dsDNA virus
DH Chen, ML Baker, CF Hryc, F DiMaio, J Jakana, W Wu, M Dougherty, ...
Proceedings of the National Academy of Sciences 108 (4), 1355-1360, 2011
Relaxation of backbone bond geometry improves protein energy landscape modeling
P Conway, MD Tyka, F DiMaio, DE Konerding, D Baker
Protein Science 23 (1), 47-55, 2014
Combined covalent-electrostatic model of hydrogen bonding improves structure prediction with Rosetta
MJ O’Meara, A Leaver-Fay, MD Tyka, A Stein, K Houlihan, F DiMaio, ...
Journal of chemical theory and computation 11 (2), 609-622, 2015
Near-atomic model of microtubule-tau interactions
EH Kellogg, NMA Hejab, S Poepsel, KH Downing, F DiMaio, E Nogales
Science 360 (6394), 1242-1246, 2018
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