| Detecting individual sites subject to episodic diversifying selection B Murrell, JO Wertheim, S Moola, T Weighill, K Scheffler, SLK Pond PLoS genet 8 (7), e1002764, 2012 | 1061* | 2012 |
| Less is more: an adaptive branch-site random effects model for efficient detection of episodic diversifying selection MD Smith, JO Wertheim, S Weaver, B Murrell, K Scheffler, ... Molecular biology and evolution 32 (5), 1342-1353, 2015 | 259 | 2015 |
| RELAX: detecting relaxed selection in a phylogenetic framework JO Wertheim, B Murrell, MD Smith, SL Kosakovsky Pond, K Scheffler Molecular biology and evolution 32 (3), 820-832, 2015 | 239* | 2015 |
| Dating the age of the SIV lineages that gave rise to HIV-1 and HIV-2 JO Wertheim, M Worobey PLoS Comput Biol 5 (5), e1000377, 2009 | 225 | 2009 |
| Gene-wide identification of episodic selection B Murrell, S Weaver, MD Smith, JO Wertheim, S Murrell, A Aylward, ... Molecular biology and evolution 32 (5), 1365-1371, 2015 | 221 | 2015 |
| The global transmission network of HIV-1 JO Wertheim, AJ Leigh Brown, NL Hepler, SR Mehta, DD Richman, ... The Journal of infectious diseases 209 (2), 304-313, 2014 | 193 | 2014 |
| Purifying selection can obscure the ancient age of viral lineages JO Wertheim, SL Kosakovsky Pond Molecular biology and evolution 28 (12), 3355-3365, 2011 | 169 | 2011 |
| A case for the ancient origin of coronaviruses JO Wertheim, DKW Chu, JSM Peiris, SLK Pond, LLM Poon Journal of Virology 87 (12), 7039-7045, 2013 | 168* | 2013 |
| HIV-TRACE (TRAnsmission Cluster Engine): a tool for large scale molecular epidemiology of HIV-1 and other rapidly evolving pathogens SL Kosakovsky Pond, S Weaver, AJ Leigh Brown, JO Wertheim Molecular biology and evolution 35 (7), 1812-1819, 2018 | 124 | 2018 |
| Using molecular HIV surveillance data to understand transmission between subpopulations in the United States AM Oster, JO Wertheim, AL Hernandez, MCB Ocfemia, N Saduvala, ... Journal of acquired immune deficiency syndromes (1999) 70 (4), 444, 2015 | 122 | 2015 |
| Social and genetic networks of HIV-1 transmission in New York City JO Wertheim, SL Kosakovsky Pond, LA Forgione, SR Mehta, B Murrell, ... PLoS pathogens 13 (1), e1006000, 2017 | 119* | 2017 |
| Using HIV networks to inform real time prevention interventions SJ Little, SLK Pond, CM Anderson, JA Young, JO Wertheim, SR Mehta, ... PloS one 9 (6), e98443, 2014 | 116 | 2014 |
| Evolutionary origins of human herpes simplex viruses 1 and 2 JO Wertheim, MD Smith, DM Smith, K Scheffler, SLK Pond Molecular biology and evolution, msu185, 2014 | 112 | 2014 |
| The emergence of SARS-CoV-2 in Europe and North America M Worobey, J Pekar, BB Larsen, MI Nelson, V Hill, JB Joy, A Rambaut, ... Science 370 (6516), 564-570, 2020 | 92* | 2020 |
| Relaxed molecular clocks, the bias–variance trade-off, and the quality of phylogenetic inference JO Wertheim, MJ Sanderson, M Worobey, A Bjork Systematic biology 59 (1), 1-8, 2010 | 64 | 2010 |
| The sordid affair between human herpesvirus and HIV S Gianella, M Massanella, JO Wertheim, DM Smith The Journal of infectious diseases 212 (6), 845-852, 2015 | 63 | 2015 |
| Inconsistencies in estimating the age of HIV-1 subtypes due to heterotachy JO Wertheim, M Fourment, SL Kosakovsky Pond Molecular biology and evolution 29 (2), 451-456, 2012 | 63 | 2012 |
| Evolutionary history of chimpanzees inferred from complete mitochondrial genomes A Bjork, W Liu, JO Wertheim, BH Hahn, M Worobey Molecular biology and evolution 28 (1), 615-623, 2011 | 61 | 2011 |
| A challenge to the ancient origin of SIVagm based on African green monkey mitochondrial genomes JO Wertheim, M Worobey PLoS pathogens 3 (7), e95, 2007 | 60 | 2007 |
| Targeting HIV prevention based on molecular epidemiology among deeply sampled subnetworks of men who have sex with men X Wang, Y Wu, L Mao, W Xia, W Zhang, L Dai, SR Mehta, JO Wertheim, ... Clinical Infectious Diseases 61 (9), 1462-1468, 2015 | 58 | 2015 |
Sergei L Kosakovsky PondProfessor of Biology, Institute for Genomics and Evolutionary Medicine, Temple UniversityVerified email at temple.edu
