Jared Simpson
TitleCited byYear
A global reference for human genetic variation
1000 Genomes Project Consortium
Nature 526 (7571), 68, 2015
31802015
ABySS: a parallel assembler for short read sequence data
JT Simpson, K Wong, SD Jackman, JE Schein, SJM Jones, I Birol
Genome research, gr. 089532.108, 2009
27252009
Complex landscapes of somatic rearrangement in human breast cancer genomes
PJ Stephens, DJ McBride, ML Lin, I Varela, ED Pleasance, JT Simpson, ...
Nature 462 (7276), 1005-1010, 2009
7932009
Efficient de novo assembly of large genomes using compressed data structures
JT Simpson, R Durbin
Genome research 22 (3), 549-556, 2012
5782012
Insights into hominid evolution from the gorilla genome sequence
A Scally, JY Dutheil, LDW Hillier, GE Jordan, I Goodhead, J Herrero, ...
Nature 483 (7388), 169, 2012
5402012
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
KR Bradnam, JN Fass, A Alexandrov, P Baranay, M Bechner, I Birol, ...
GigaScience 2 (1), 10, 2013
4472013
Assemblathon 1: a competitive assessment of de novo short read assembly methods
DA Earl, K Bradnam, JS John, A Darling, D Lin, J Faas, HOK Yu, B Vince, ...
Genome research, gr. 126599.111, 2011
4452011
Real-time, portable genome sequencing for Ebola surveillance
J Quick, NJ Loman, S Duraffour, JT Simpson, E Severi, L Cowley, JA Bore, ...
Nature 530 (7589), 228, 2016
4112016
A complete bacterial genome assembled de novo using only nanopore sequencing data
NJ Loman, J Quick, JT Simpson
Nature methods 12 (8), 733, 2015
3322015
Trait variation in yeast is defined by population history
J Warringer, E Zörgö, FA Cubillos, A Zia, A Gjuvsland, JT Simpson, ...
PLoS genetics 7 (6), e1002111, 2011
2342011
Efficient construction of an assembly string graph using the FM-index
JT Simpson, R Durbin
Bioinformatics 26 (12), i367-i373, 2010
2142010
Nanopore sequencing and assembly of a human genome with ultra-long reads
M Jain, S Koren, KH Miga, J Quick, AC Rand, TA Sasani, JR Tyson, ...
Nature biotechnology 36 (4), 338, 2018
2132018
Revealing the genetic structure of a trait by sequencing a population under selection
L Parts, F Cubillos, J Warringer, K Jain, F Salinas, SJ Bumpstead, M Molin, ...
Genome research, gr. 116731.110, 2011
1832011
A renewed model of pancreatic cancer evolution based on genomic rearrangement patterns
F Notta, M Chan-Seng-Yue, M Lemire, Y Li, GW Wilson, AA Connor, ...
Nature 538 (7625), 378, 2016
1612016
A high-definition view of functional genetic variation from natural yeast genomes
A Bergström, JT Simpson, F Salinas, B Barré, L Parts, A Zia, ...
Molecular biology and evolution 31 (4), 872-888, 2014
1592014
Establishment and cryptic transmission of Zika virus in Brazil and the Americas
NR Faria, J Quick, IM Claro, J Theze, JG de Jesus, M Giovanetti, ...
Nature 546 (7658), 406, 2017
1542017
MinION Analysis and Reference Consortium: Phase 1 data release and analysis
CLC Ip, M Loose, JR Tyson, M de Cesare, BL Brown, M Jain, RM Leggett, ...
F1000Research 4, 2015
1402015
The khmer software package: enabling efficient nucleotide sequence analysis
MR Crusoe, HF Alameldin, S Awad, E Boucher, A Caldwell, R Cartwright, ...
F1000Research 4, 2015
138*2015
A comprehensive assessment of somatic mutation detection in cancer using whole-genome sequencing
TS Alioto, I Buchhalter, S Derdak, B Hutter, MD Eldridge, E Hovig, ...
Nature communications 6, 10001, 2015
1352015
Detecting DNA cytosine methylation using nanopore sequencing
JT Simpson, RE Workman, PC Zuzarte, M David, LJ Dursi, W Timp
Nature Methods 14 (4), 407, 2017
118*2017
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Articles 1–20