Jonas Behr
Jonas Behr
Computational Biology Group, ETH Zurich
Verified email at sophiagenetics.com
TitleCited byYear
Multiple reference genomes and transcriptomes for Arabidopsis thaliana
X Gan, O Stegle, J Behr, JG Steffen, P Drewe, KL Hildebrand, R Lyngsoe, ...
Nature 477 (7365), 419, 2011
5522011
Assessment of transcript reconstruction methods for RNA-seq
T Steijger, JF Abril, PG Engström, F Kokocinski, M Akerman, T Alioto, ...
Nature methods 10 (12), 1177, 2013
4252013
Systematic evaluation of spliced alignment programs for RNA-seq data
PG Engström, T Steijger, B Sipos, GR Grant, A Kahles, T Alioto, J Behr, ...
Nature methods 10 (12), 1185, 2013
3882013
The SHOGUN machine learning toolbox
SĆ Sonnenburg, S Henschel, C Widmer, J Behr, A Zien, F Bona, A Binder, ...
Journal of Machine Learning Research 11 (Jun), 1799-1802, 2010
3082010
Accurate splice site prediction using support vector machines
S Sonnenburg, G Schweikert, P Philips, J Behr, G Rätsch
BMC bioinformatics 8 (10), S7, 2007
1962007
Nonsense-mediated decay of alternative precursor mRNA splicing variants is a major determinant of the Arabidopsis steady state transcriptome
G Drechsel, A Kahles, AK Kesarwani, E Stauffer, J Behr, P Drewe, ...
The Plant Cell 25 (10), 3726-3742, 2013
1122013
mGene: accurate SVM-based gene finding with an application to nematode genomes
G Schweikert, A Zien, G Zeller, J Behr, C Dieterich, CS Ong, P Philips, ...
Genome research 19 (11), 2133-2143, 2009
992009
MITIE: Simultaneous RNA-Seq-based transcript identification and quantification in multiple samples
J Behr, A Kahles, Y Zhong, VT Sreedharan, P Drewe, G Rätsch
Bioinformatics 29 (20), 2529-2538, 2013
522013
Network-based integration of multi-omics data for prioritizing cancer genes
C Dimitrakopoulos, SK Hindupur, L Häfliger, J Behr, H Montazeri, MN Hall, ...
Bioinformatics 34 (14), 2441-2448, 2018
282018
Alternative splicing substantially diversifies the transcriptome during early photomorphogenesis and correlates with the energy availability in Arabidopsis
L Hartmann, P Drewe-Boß, T Wießner, G Wagner, S Geue, HC Lee, ...
The Plant Cell 28 (11), 2715-2734, 2016
272016
MMR: a tool for read multi-mapper resolution
A Kahles, J Behr, G Rätsch
Bioinformatics 32 (5), 770-772, 2015
272015
mGene.web: a web service for accurate computational gene finding
G Schweikert, J Behr, A Zien, G Zeller, CS Ong, S Sonnenburg, G Rätsch
Nucleic acids research 37 (suppl_2), W312-W316, 2009
272009
Transcript quantification with RNA-Seq data
R Bohnert, J Behr, G Rätsch
BMC bioinformatics 10 (13), P5, 2009
232009
Detailed simulation of cancer exome sequencing data reveals differences and common limitations of variant callers
AL Hofmann, J Behr, J Singer, J Kuipers, C Beisel, P Schraml, H Moch, ...
BMC bioinformatics 18 (1), 8, 2017
202017
Next generation genome annotation with mGene. ngs
J Behr, R Bohnert, G Zeller, G Schweikert, L Hartmann, G Rätsch
BMC Bioinformatics 11 (10), O8, 2010
92010
Oqtans: a Galaxy-integrated workflow for quantitative transcriptome analysis from NGS Data
SJ Schultheiss, G Jean, J Behr, R Bohnert, P Drewe, N Görnitz, A Kahles, ...
BMC bioinformatics 12 (11), A7, 2011
62011
mGene: A novel discriminative gene finding system
G Schweikert
2008 Topics Meeting: Worm Genomics and Systems Biology, 2008
42008
Mutational interactions define novel cancer subgroups
J Kuipers, T Thurnherr, G Moffa, P Suter, J Behr, R Goosen, G Christofori, ...
Nature communications 9 (1), 4353, 2018
32018
Shogun-a large scale machine learning toolbox
S Sonnenburg, G Rätsch, S Henschel, C Widmer, J Behr, A Zien, ...
Book of Abstracts, 155, 2014
32014
mTim: rapid and accurate transcript reconstruction from RNA-Seq data
G Zeller, N Goernitz, A Kahles, J Behr, P Mudrakarta, S Sonnenburg, ...
arXiv preprint arXiv:1309.5211, 2013
32013
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Articles 1–20