Jennifer Listgarten - Google Scholar Citations

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	All	Since 2015
Citations	5188	3519
h-index	28	26
i10-index	41	34

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200520062007200820092010201120122013201420152016201720182019202015 68 111 133 143 120 148 223 255 383 409 505 584 731 849 426

Co-authors

Christoph LippertProfessor, Hasso Plattner Institute, Universität PotsdamVerified email at hpi.de
Jonathan CarlsonSenior Researcher, Microsoft ResearchVerified email at microsoft.com
Radford NealEmeritus Professor, Dept. of Statistics and Dept. of Computer Science, University of TorontoVerified email at utstat.toronto.edu
Sam Roweis (Memorial)New York UniversityVerified email at buffalo.edu
Russ GreinerProfessor of Computer Science, University of AlbertaVerified email at ualberta.ca
Gerald QuonAssistant Professor, University of California, DavisVerified email at ucdavis.edu
David WishartProfessor, Depts. of Computing Science and Biological Sciences - University of AlbertaVerified email at ualberta.ca
Eleazar EskinUniversity of California, Los AngelesVerified email at cs.ucla.edu
Vincent Y. F. TanNational University of SingaporeVerified email at nus.edu.sg
Oliver StegleGerman Cancer Research Center (DKFZ) & EMBL HeidelbergVerified email at dkfz.de
Sean CutlerProfessor of Plant Cell Biology, University of California, RiversideVerified email at ucr.edu
Quaid MorrisComputational and Systems Biology Program, Memorial Sloan Kettering Cancer CenterVerified email at mskcc.org
Ying LiuMassachusetts Institute of TechnologyVerified email at mit.edu

Jennifer Listgarten

Professor, UC Berkeley EECS and Center for Computational Biology

Verified email at berkeley.edu - Homepage

Machine Learning Computational Biology Protein Engineering Drug Discovery Statistical Genetics


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Optimized sgRNA design to maximize activity and minimize off-target effects of CRISPR-Cas9 JG Doench, N Fusi, M Sullender, M Hegde, EW Vaimberg, KF Donovan, ... Nature biotechnology 34 (2), 184, 2016	1171	2016
FaST linear mixed models for genome-wide association studies C Lippert, J Listgarten, Y Liu, CM Kadie, RI Davidson, D Heckerman Nature methods 8 (10), 833, 2011	758	2011
Statistical and computational methods for comparative proteomic profiling using liquid chromatography-tandem mass spectrometry J Listgarten, A Emili Molecular & Cellular Proteomics 4 (4), 419-434, 2005	353	2005
Improved linear mixed models for genome-wide association studies J Listgarten, C Lippert, CM Kadie, RI Davidson, E Eskin, D Heckerman Nature methods 9 (6), 525, 2012	272	2012
Predictive models for breast cancer susceptibility from multiple single nucleotide polymorphisms J Listgarten, S Damaraju, B Poulin, L Cook, J Dufour, A Driga, J Mackey, ... Clinical cancer research 10 (8), 2725-2737, 2004	192	2004
Epigenome-wide association studies without the need for cell-type composition J Zou, C Lippert, D Heckerman, M Aryee, J Listgarten Nature methods 11 (3), 309-311, 2014	184	2014
Multiple alignment of continuous time series J Listgarten, RM Neal, ST Roweis, A Emili Advances in neural information processing systems, 817-824, 2005	157	2005
Additive contribution of HLA class I alleles in the immune control of HIV-1 infection A Leslie, PC Matthews, J Listgarten, JM Carlson, C Kadie, T Ndung'u, ... Journal of virology 84 (19), 9879-9888, 2010	155	2010
Correction for hidden confounders in the genetic analysis of gene expression J Listgarten, C Kadie, EE Schadt, D Heckerman Proceedings of the National Academy of Sciences 107 (38), 16465-16470, 2010	152	2010
Lymphovascular invasion is associated with poor survival in gastric cancer: an application of gene-expression and tissue array techniques BJ Dicken, K Graham, SM Hamilton, S Andrews, R Lai, J Listgarten, ... Annals of surgery 243 (1), 64, 2006	145	2006
Extensive HLA class I allele promiscuity among viral CTL epitopes N Frahm, K Yusim, TJ Suscovich, S Adams, J Sidney, P Hraber, HS Hewitt, ... European journal of immunology 37 (9), 2419-2433, 2007	126	2007
Widespread impact of HLA restriction on immune control and escape pathways of HIV-1 JM Carlson, J Listgarten, N Pfeifer, V Tan, C Kadie, BD Walker, T Ndung'u, ... Journal of virology 86 (9), 5230-5243, 2012	105	2012
Leveraging information across HLA alleles/supertypes improves epitope prediction D Heckerman, C Kadie, J Listgarten Journal of Computational Biology 14 (6), 736-746, 2007	93	2007
Correlates of protective cellular immunity revealed by analysis of population-level immune escape pathways in HIV-1 JM Carlson, CJ Brumme, E Martin, J Listgarten, MA Brockman, AQ Le, ... Journal of virology 86 (24), 13202-13216, 2012	92	2012
Difference detection in LC-MS data for protein biomarker discovery J Listgarten, RM Neal, ST Roweis, P Wong, A Emili Bioinformatics 23 (2), e198-e204, 2007	92	2007
Orthologous CRISPR–Cas9 enzymes for combinatorial genetic screens FJ Najm, C Strand, KF Donovan, M Hegde, KR Sanson, EW Vaimberg, ... Nature biotechnology 36 (2), 179, 2018	90	2018
A genome-to-genome analysis of associations between human genetic variation, HIV-1 sequence diversity, and viral control I Bartha, JM Carlson, CJ Brumme, PJ McLaren, ZL Brumme, M John, ... elife 2, e01123, 2013	84	2013
A powerful and efficient set test for genetic markers that handles confounders J Listgarten, C Lippert, EY Kang, J Xiang, CM Kadie, D Heckerman Bioinformatics 29 (12), 1526-1533, 2013	79	2013
let-7 miRNAs can act through notch to regulate human gliogenesis M Patterson, X Gaeta, K Loo, M Edwards, S Smale, J Cinkornpumin, Y Xie, ... Stem cell reports 3 (5), 758-773, 2014	76	2014
Prediction of off-target activities for the end-to-end design of CRISPR guide RNAs J Listgarten, M Weinstein, BP Kleinstiver, AA Sousa, JK Joung, J Crawford, ... Nature biomedical engineering 2 (1), 38-47, 2018	73	2018

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