Jennifer Listgarten
Jennifer Listgarten
Professor, UC Berkeley EECS and Center for Computational Biology
Verified email at berkeley.edu - Homepage
TitleCited byYear
Optimized sgRNA design to maximize activity and minimize off-target effects of CRISPR-Cas9
JG Doench, N Fusi, M Sullender, M Hegde, EW Vaimberg, KF Donovan, ...
Nature biotechnology 34 (2), 184, 2016
9092016
FaST linear mixed models for genome-wide association studies
C Lippert, J Listgarten, Y Liu, CM Kadie, RI Davidson, D Heckerman
Nature methods 8 (10), 833, 2011
6922011
Statistical and computational methods for comparative proteomic profiling using liquid chromatography-tandem mass spectrometry
J Listgarten, A Emili
Molecular & cellular proteomics 4 (4), 419-434, 2005
3442005
Improved linear mixed models for genome-wide association studies
J Listgarten, C Lippert, CM Kadie, RI Davidson, E Eskin, D Heckerman
Nature methods 9 (6), 525, 2012
2462012
Predictive models for breast cancer susceptibility from multiple single nucleotide polymorphisms
J Listgarten, S Damaraju, B Poulin, L Cook, J Dufour, A Driga, J Mackey, ...
Clinical cancer research 10 (8), 2725-2737, 2004
1802004
Epigenome-wide association studies without the need for cell-type composition
J Zou, C Lippert, D Heckerman, M Aryee, J Listgarten
Nature methods 11 (3), 309, 2014
1682014
Multiple alignment of continuous time series
J Listgarten, RM Neal, ST Roweis, A Emili
Advances in neural information processing systems, 817-824, 2005
1502005
Additive contribution of HLA class I alleles in the immune control of HIV-1 infection
A Leslie, PC Matthews, J Listgarten, JM Carlson, C Kadie, T Ndung'u, ...
Journal of virology 84 (19), 9879-9888, 2010
1492010
Correction for hidden confounders in the genetic analysis of gene expression
J Listgarten, C Kadie, EE Schadt, D Heckerman
Proceedings of the National Academy of Sciences 107 (38), 16465-16470, 2010
1452010
Lymphovascular invasion is associated with poor survival in gastric cancer: an application of gene-expression and tissue array techniques
BJ Dicken, K Graham, SM Hamilton, S Andrews, R Lai, J Listgarten, ...
Annals of surgery 243 (1), 64, 2006
1372006
Extensive HLA class I allele promiscuity among viral CTL epitopes
N Frahm, K Yusim, TJ Suscovich, S Adams, J Sidney, P Hraber, HS Hewitt, ...
European journal of immunology 37 (9), 2419-2433, 2007
1232007
Widespread impact of HLA restriction on immune control and escape pathways of HIV-1
JM Carlson, J Listgarten, N Pfeifer, V Tan, C Kadie, BD Walker, T Ndung'u, ...
Journal of virology 86 (9), 5230-5243, 2012
1022012
Correlates of protective cellular immunity revealed by analysis of population-level immune escape pathways in HIV-1
JM Carlson, CJ Brumme, E Martin, J Listgarten, MA Brockman, AQ Le, ...
Journal of virology 86 (24), 13202-13216, 2012
912012
Leveraging information across HLA alleles/supertypes improves epitope prediction
D Heckerman, C Kadie, J Listgarten
Journal of Computational Biology 14 (6), 736-746, 2007
912007
Difference detection in LC-MS data for protein biomarker discovery
J Listgarten, RM Neal, ST Roweis, P Wong, A Emili
Bioinformatics 23 (2), e198-e204, 2007
912007
A genome-to-genome analysis of associations between human genetic variation, HIV-1 sequence diversity, and viral control
I Bartha, JM Carlson, CJ Brumme, PJ McLaren, ZL Brumme, M John, ...
Elife 2, e01123, 2013
792013
Orthologous CRISPR–Cas9 enzymes for combinatorial genetic screens
FJ Najm, C Strand, KF Donovan, M Hegde, KR Sanson, EW Vaimberg, ...
Nature biotechnology 36 (2), 179, 2018
722018
A powerful and efficient set test for genetic markers that handles confounders
J Listgarten, C Lippert, EY Kang, J Xiang, CM Kadie, D Heckerman
Bioinformatics 29 (12), 1526-1533, 2013
692013
let-7 miRNAs can act through notch to regulate human gliogenesis
M Patterson, X Gaeta, K Loo, M Edwards, S Smale, J Cinkornpumin, Y Xie, ...
Stem cell reports 3 (5), 758-773, 2014
632014
Statistical resolution of ambiguous HLA typing data
J Listgarten, Z Brumme, C Kadie, G Xiaojiang, B Walker, M Carrington, ...
PLoS computational biology 4 (2), e1000016, 2008
612008
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