Jennifer Listgarten

Cited by

	All	Since 2016
Citations	6234	4137
h-index	32	27
i10-index	41	34

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200620072008200920102011201220132014201520162017201820192020202172 109 134 143 122 157 228 247 400 411 526 598 766 871 1147 214

Co-authors

Christoph LippertProfessor, Hasso Plattner Institute, Universität PotsdamVerified email at hpi.de
Jonathan CarlsonSenior Researcher, Microsoft ResearchVerified email at microsoft.com
Radford NealU Toronto *** GOOGLE SCHOLAR CAN GIVE WRONG PUBLICATION DATE/REFERENCE - LOOK AT ACTUAL PAPER/BOOK!Verified email at utstat.toronto.edu
Sam Roweis (Memorial)New York UniversityVerified email at buffalo.edu
Russ GreinerProfessor of Computer Science, University of AlbertaVerified email at ualberta.ca
Gerald QuonAssistant Professor, University of California, DavisVerified email at ucdavis.edu
David WishartProfessor, Depts. of Computing Science and Biological Sciences - University of AlbertaVerified email at ualberta.ca
Eleazar EskinUniversity of California, Los AngelesVerified email at cs.ucla.edu
Oliver StegleGerman Cancer Research Center (DKFZ) & EMBL HeidelbergVerified email at dkfz.de
Vincent Y. F. TanNational University of SingaporeVerified email at nus.edu.sg
Quaid MorrisComputational and Systems Biology Program, Memorial Sloan Kettering Cancer CenterVerified email at mskcc.org
Sean CutlerProfessor of Plant Cell Biology, University of California, RiversideVerified email at ucr.edu
Ying LiuMassachusetts Institute of TechnologyVerified email at mit.edu

Jennifer Listgarten

Professor, UC Berkeley EECS and Center for Computational Biology

Verified email at berkeley.edu - Homepage

Machine Learning Computational Biology Protein Engineering Drug Discovery Statistical Genetics


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Optimized sgRNA design to maximize activity and minimize off-target effects of CRISPR-Cas9 JG Doench, N Fusi, M Sullender, M Hegde, EW Vaimberg, KF Donovan, ... Nature biotechnology 34 (2), 184-191, 2016	1655	2016
FaST linear mixed models for genome-wide association studies C Lippert, J Listgarten, Y Liu, CM Kadie, RI Davidson, D Heckerman Nature methods 8 (10), 833-835, 2011	882	2011
Statistical and computational methods for comparative proteomic profiling using liquid chromatography-tandem mass spectrometry J Listgarten, A Emili Molecular & Cellular Proteomics 4 (4), 419-434, 2005	360	2005
Improved linear mixed models for genome-wide association studies J Listgarten, C Lippert, CM Kadie, RI Davidson, E Eskin, D Heckerman Nature methods 9 (6), 525-526, 2012	300	2012
Predictive models for breast cancer susceptibility from multiple single nucleotide polymorphisms J Listgarten, S Damaraju, B Poulin, L Cook, J Dufour, A Driga, J Mackey, ... Clinical cancer research 10 (8), 2725-2737, 2004	208	2004
Epigenome-wide association studies without the need for cell-type composition J Zou, C Lippert, D Heckerman, M Aryee, J Listgarten Nature methods 11 (3), 309-311, 2014	201	2014
Correction for hidden confounders in the genetic analysis of gene expression J Listgarten, C Kadie, EE Schadt, D Heckerman Proceedings of the National Academy of Sciences 107 (38), 16465-16470, 2010	171	2010
Multiple alignment of continuous time series J Listgarten, R Neal, S Roweis, A Emili Advances in neural information processing systems 17, 817-824, 2004	166	2004
Additive contribution of HLA class I alleles in the immune control of HIV-1 infection A Leslie, PC Matthews, J Listgarten, JM Carlson, C Kadie, T Ndung'u, ... Journal of virology 84 (19), 9879-9888, 2010	164	2010
Lymphovascular invasion is associated with poor survival in gastric cancer: an application of gene-expression and tissue array techniques BJ Dicken, K Graham, SM Hamilton, S Andrews, R Lai, J Listgarten, ... Annals of surgery 243 (1), 64, 2006	150	2006
Orthologous CRISPR–Cas9 enzymes for combinatorial genetic screens FJ Najm, C Strand, KF Donovan, M Hegde, KR Sanson, EW Vaimberg, ... Nature biotechnology 36 (2), 179, 2018	134	2018
Extensive HLA class I allele promiscuity among viral CTL epitopes N Frahm, K Yusim, TJ Suscovich, S Adams, J Sidney, P Hraber, HS Hewitt, ... European journal of immunology 37 (9), 2419-2433, 2007	134	2007
Prediction of off-target activities for the end-to-end design of CRISPR guide RNAs J Listgarten, M Weinstein, BP Kleinstiver, AA Sousa, JK Joung, J Crawford, ... Nature biomedical engineering 2 (1), 38-47, 2018	126	2018
Widespread impact of HLA restriction on immune control and escape pathways of HIV-1 JM Carlson, J Listgarten, N Pfeifer, V Tan, C Kadie, BD Walker, T Ndung'u, ... Journal of virology 86 (9), 5230-5243, 2012	110	2012
Correlates of protective cellular immunity revealed by analysis of population-level immune escape pathways in HIV-1 JM Carlson, CJ Brumme, E Martin, J Listgarten, MA Brockman, AQ Le, ... Journal of virology 86 (24), 13202-13216, 2012	100	2012
Leveraging information across HLA alleles/supertypes improves epitope prediction D Heckerman, C Kadie, J Listgarten Journal of Computational Biology 14 (6), 736-746, 2007	95	2007
A genome-to-genome analysis of associations between human genetic variation, HIV-1 sequence diversity, and viral control I Bartha, JM Carlson, CJ Brumme, PJ McLaren, ZL Brumme, M John, ... elife 2, e01123, 2013	93	2013
Difference detection in LC-MS data for protein biomarker discovery J Listgarten, RM Neal, ST Roweis, P Wong, A Emili Bioinformatics 23 (2), e198-e204, 2007	92	2007
A powerful and efficient set test for genetic markers that handles confounders J Listgarten, C Lippert, EY Kang, J Xiang, CM Kadie, D Heckerman Bioinformatics 29 (12), 1526-1533, 2013	85	2013
let-7 miRNAs can act through notch to regulate human gliogenesis M Patterson, X Gaeta, K Loo, M Edwards, S Smale, J Cinkornpumin, Y Xie, ... Stem cell reports 3 (5), 758-773, 2014	84	2014

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