| ABySS 2.0: resource-efficient assembly of large genomes using a Bloom filter SD Jackman, BP Vandervalk, H Mohamadi, J Chu, S Yeo, SA Hammond, ... Genome research 27 (5), 768-777, 2017 | 615 | 2017 |
| Improved white spruce (Picea glauca) genome assemblies and annotation of large gene families of conifer terpenoid and phenolic defense metabolism RL Warren, CI Keeling, MMS Yuen, A Raymond, GA Taylor, ... The Plant Journal 83 (2), 189-212, 2015 | 233 | 2015 |
| BioBloom tools: fast, accurate and memory-efficient host species sequence screening using bloom filters J Chu, S Sadeghi, A Raymond, SD Jackman, KM Nip, R Mar, ... Bioinformatics 30 (23), 3402-3404, 2014 | 115 | 2014 |
| Design and analysis of genetic fuzzy systems for intrusion detection in computer networks MS Abadeh, H Mohamadi, J Habibi Expert Systems with Applications 38 (6), 7067-7075, 2011 | 114 | 2011 |
| Tigmint: correcting assembly errors using linked reads from large molecules SD Jackman, L Coombe, J Chu, RL Warren, BP Vandervalk, S Yeo, Z Xue, ... BMC bioinformatics 19, 1-10, 2018 | 105 | 2018 |
| Data mining with a simulated annealing based fuzzy classification system H Mohamadi, J Habibi, MS Abadeh, H Saadi Pattern Recognition 41 (5), 1824-1833, 2008 | 80 | 2008 |
| ntEdit: scalable genome sequence polishing RL Warren, L Coombe, H Mohamadi, J Zhang, B Jaquish, N Isabel, ... Bioinformatics, 565374, 2019 | 79 | 2019 |
| ntHash: recursive nucleotide hashing H Mohamadi, J Chu, BP Vandervalk, I Birol Bioinformatics 32 (22), 3492-3494, 2016 | 76 | 2016 |
| ntCard: a streaming algorithm for cardinality estimation in genomics data H Mohamadi, H Khan, I Birol Bioinformatics 33 (9), 1324-1330, 2017 | 74 | 2017 |
| Innovations and challenges in detecting long read overlaps: an evaluation of the state-of-the-art J Chu, H Mohamadi, RL Warren, C Yang, I Birol Bioinformatics 33 (8), 1261-1270, 2016 | 65 | 2016 |
| Organellar Genomes of White Spruce ( Picea glauca ): Assembly and Annotation SD Jackman, RL Warren, EA Gibb, BP Vandervalk, H Mohamadi, J Chu, ... Genome Biology and Evolution 8 (1), 29-41, 2016 | 62 | 2016 |
| RNA-Bloom enables reference-free and reference-guided sequence assembly for single-cell transcriptomes KM Nip, R Chiu, C Yang, J Chu, H Mohamadi, RL Warren, I Birol Genome research 30 (8), 1191-1200, 2020 | 48* | 2020 |
| Konnector v2. 0: pseudo-long reads from paired-end sequencing data BP Vandervalk, C Yang, Z Xue, K Raghavan, J Chu, H Mohamadi, ... BMC Medical Genomics 8, 1-10, 2015 | 25 | 2015 |
| BOND: basic oligonucleotide design L Ilie, H Mohamadi, GB Golding, W F Smyth BMC bioinformatics 14, 1-8, 2013 | 21 | 2013 |
| Spruce giga‐genomes: structurally similar yet distinctive with differentially expanding gene families and rapidly evolving genes KK Gagalova, RL Warren, L Coombe, J Wong, KM Nip, MMS Yuen, ... The Plant Journal 111 (5), 1469-1485, 2022 | 19 | 2022 |
| Konnector: Connecting paired-end reads using a bloom filter de Bruijn graph BP Vandervalk, SD Jackman, A Raymond, H Mohamadi, C Yang, ... 2014 IEEE international conference on bioinformatics and biomedicine (BIBM …, 2014 | 19 | 2014 |
| Mismatch-tolerant, alignment-free sequence classification using multiple spaced seeds and multiindex Bloom filters J Chu, H Mohamadi, E Erhan, J Tse, R Chiu, S Yeo, I Birol Proceedings of the National Academy of Sciences 117 (29), 16961-16968, 2020 | 18* | 2020 |
| DIDA: Distributed Indexing Dispatched Alignment H Mohamadi, BP Vandervalk, A Raymond, SD Jackman, J Chu, ... PloS one 10 (4), e0126409, 2015 | 15 | 2015 |
| ntHash2: recursive spaced seed hashing for nucleotide sequences P Kazemi, J Wong, V Nikolić, H Mohamadi, RL Warren, I Birol Bioinformatics 38 (20), 4812-4813, 2022 | 12 | 2022 |
| Spaced seed data structures for de novo assembly I Birol, J Chu, H Mohamadi, SD Jackman, K Raghavan, BP Vandervalk, ... International journal of genomics 2015, 2015 | 11 | 2015 |
Inanc BirolGenome Sciences Centre, BC Cancer AgencyVerified email at bcgsc.ca
