Luke R. Thompson
Luke R. Thompson
Associate Research Professor, NOAA Northern Gulf Institute
Verified email at - Homepage
Cited by
Cited by
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ...
Nature biotechnology 37 (8), 852-857, 2019
A communal catalogue reveals Earth’s multiscale microbial diversity
LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ...
Nature 551 (7681), 2017
Best practices for analysing microbiomes
R Knight, A Vrbanac, BC Taylor, A Aksenov, C Callewaert, J Debelius, ...
Nature Reviews Microbiology 16 (7), 410-422, 2018
Deblur rapidly resolves single-nucleotide community sequence patterns
A Amir, D McDonald, JA Navas-Molina, E Kopylova, JT Morton, ZZ Xu, ...
mSystems 2 (2), e00191-16, 2017
Species-level functional profiling of metagenomes and metatranscriptomes
EA Franzosa, LJ McIver, G Rahnavard, LR Thompson, M Schirmer, ...
Nature methods 15 (11), 962-968, 2018
Prevalence and evolution of core photosystem II genes in marine cyanobacterial viruses and their hosts
MB Sullivan, D Lindell, JA Lee, LR Thompson, JP Bielawski, ...
PLOS Biology 4 (8), e234, 2006
Phage auxiliary metabolic genes and the redirection of cyanobacterial host carbon metabolism
LR Thompson, Q Zeng, L Kelly, KH Huang, AU Singer, JA Stubbe, ...
Proceedings of the National Academy of Sciences 108 (39), E757-E764, 2011
Microbial community assembly and metabolic function during mammalian corpse decomposition
JL Metcalf, ZZ Xu, S Weiss, S Lax, W Van Treuren, ER Hyde, SJ Song, ...
Science 351 (6269), 158-162, 2016
Genomic analysis of oceanic cyanobacterial myoviruses compared with T4‐like myoviruses from diverse hosts and environments
MB Sullivan, KH Huang, JC Ignacio‐Espinoza, AM Berlin, L Kelly, ...
Environmental Microbiology 12 (11), 3035-3056, 2010
American Gut: an open platform for citizen science microbiome research
D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ...
Msystems 3 (3), e00031-18, 2018
Exploring the vast diversity of marine viruses
M Breitbart, LR Thompson, CA Suttle, MB Sullivan
Oceanography 20 (2), 135-139, 2007
Choreography of the transcriptome, photophysiology, and cell cycle of a minimal photoautotroph, Prochlorococcus
ER Zinser, D Lindell, ZI Johnson, ME Futschik, C Steglich, ML Coleman, ...
PLOS ONE 4 (4), e5135, 2009
Evolutionary trends in host physiology outweigh dietary niche in structuring primate gut microbiomes
KR Amato, JG Sanders, SJ Song, M Nute, JL Metcalf, LR Thompson, ...
The ISME journal 13 (3), 576-587, 2019
Physiology and evolution of nitrate acquisition in Prochlorococcus
PM Berube, SJ Biller, AG Kent, JW Berta-Thompson, SE Roggensack, ...
The ISME Journal 9 (5), 1195, 2015
A novel sparse compositional technique reveals microbial perturbations
C Martino, JT Morton, CA Marotz, LR Thompson, A Tripathi, R Knight, ...
MSystems 4 (1), e00016-19, 2019
DNA sequencing as a tool to monitor marine ecological status
KD Goodwin, LR Thompson, B Duarte, T Kahlke, AR Thompson, ...
Frontiers in Marine Science 4, 107, 2017
Taxon-specific aerosolization of bacteria and viruses in an experimental ocean-atmosphere mesocosm
JM Michaud, LR Thompson, D Kaul, JL Espinoza, RA Richter, ZZ Xu, ...
Nature communications 9 (1), 1-10, 2018
Patterns of ecological specialization among microbial populations in the Red Sea and diverse oligotrophic marine environments
LR Thompson, C Field, T Romanuk, D Ngugi, R Siam, H Dorry, U Stingl
Ecology and Evolution 3 (6), 1780-1797, 2013
Metagenomic covariation along densely sampled environmental gradients in the Red Sea
LR Thompson, GJ Williams, MF Haroon, A Shibl, P Larsen, J Shorenstein, ...
The ISME Journal 11, 138-151, 2016
A catalogue of 136 microbial draft genomes from Red Sea metagenomes
MF Haroon, LR Thompson, DH Parks, P Hugenholtz, U Stingl
Scientific Data 3, 160050, 2016
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Articles 1–20