Matthew T. Weirauch
TitleCited byYear
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
ENCODE Project Consortium
Nature 447 (7146), 799, 2007
49092007
Genome sequence of the Brown Norway rat yields insights into mammalian evolution
Rat Genome Sequencing Project Consortium
Nature 428 (6982), 493, 2004
20452004
The genetic landscape of a cell
M Costanzo, A Baryshnikova, J Bellay, Y Kim, ED Spear, CS Sevier, ...
science 327 (5964), 425-431, 2010
19262010
Predicting the sequence specificities of DNA-and RNA-binding proteins by deep learning
B Alipanahi, A Delong, MT Weirauch, BJ Frey
Nature biotechnology 33 (8), 831, 2015
10322015
A compendium of RNA-binding motifs for decoding gene regulation
D Ray, H Kazan, KB Cook, MT Weirauch, HS Najafabadi, X Li, ...
Nature 499 (7457), 172, 2013
8042013
The UCSC genome browser database: update 2006
AS Hinrichs, D Karolchik, R Baertsch, GP Barber, G Bejerano, H Clawson, ...
Nucleic acids research 34 (suppl_1), D590-D598, 2006
7522006
Determination and inference of eukaryotic transcription factor sequence specificity
MT Weirauch, A Yang, M Albu, AG Cote, A Montenegro-Montero, P Drewe, ...
Cell 158 (6), 1431-1443, 2014
6492014
Evaluation of methods for modeling transcription factor sequence specificity
MT Weirauch, A Cote, R Norel, M Annala, Y Zhao, TR Riley, ...
Nature biotechnology 31 (2), 126, 2013
2642013
MultiPipMaker and supporting tools: Alignments and analysis of multiple genomic DNA sequences
S Schwartz, L Elnitski, M Li, M Weirauch, C Riemer, A Smit, NCS Program, ...
Nucleic acids research 31 (13), 3518-3524, 2003
2592003
The human transcription factors
SA Lambert, A Jolma, LF Campitelli, PK Das, Y Yin, M Albu, X Chen, ...
Cell 172 (4), 650-665, 2018
2462018
Temporal transcriptional response to ethylene gas drives growth hormone cross-regulation in Arabidopsis
KN Chang, S Zhong, MT Weirauch, G Hon, M Pelizzola, H Li, SC Huang, ...
Elife 2, e00675, 2013
2082013
Genome-wide association analysis of eosinophilic esophagitis provides insight into the tissue specificity of this allergic disease
LC Kottyan, BP Davis, JD Sherrill, K Liu, M Rochman, K Kaufman, ...
Nature genetics 46 (8), 895, 2014
1742014
A global analysis of genetic interactions in Caenorhabditis elegans
AB Byrne, MT Weirauch, V Wong, M Koeva, SJ Dixon, JM Stuart, PJ Roy
Journal of biology 6 (3), 8, 2007
1632007
C2H2 zinc finger proteins greatly expand the human regulatory lexicon
HS Najafabadi, S Mnaimneh, FW Schmitges, M Garton, KN Lam, A Yang, ...
Nature biotechnology 33 (5), 555, 2015
1532015
Structural basis for recognition of AT-rich DNA by unrelated xenogeneic silencing proteins
BRG Gordon, Y Li, A Cote, MT Weirauch, P Ding, TR Hughes, ...
Proceedings of the National Academy of Sciences 108 (26), 10690-10695, 2011
1512011
Mapping and dynamics of regulatory DNA and transcription factor networks in A. thaliana
AM Sullivan, AA Arsovski, J Lempe, KL Bubb, MT Weirauch, PJ Sabo, ...
Cell reports 8 (6), 2015-2030, 2014
1442014
Conserved expression without conserved regulatory sequence: the more things change, the more they stay the same
MT Weirauch, TR Hughes
Trends in genetics 26 (2), 66-74, 2010
1442010
Genetic associations with gestational duration and spontaneous preterm birth
G Zhang, B Feenstra, J Bacelis, X Liu, LM Muglia, J Juodakis, DE Miller, ...
New England Journal of Medicine 377 (12), 1156-1167, 2017
1152017
Unique features of a global human ectoparasite identified through sequencing of the bed bug genome
JB Benoit, ZN Adelman, K Reinhardt, A Dolan, M Poelchau, EC Jennings, ...
Nature communications 7, 10165, 2016
942016
A catalogue of eukaryotic transcription factor types, their evolutionary origin, and species distribution
MT Weirauch, TR Hughes
A handbook of transcription factors, 25-73, 2011
862011
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Articles 1–20