Reconstructing evolutionary trajectories of mutation signature activities in cancer using TrackSig Y Rubanova, R Shi, CF Harrigan, R Li, J Wintersinger, N Sahin, ... Nature communications 11 (1), 731, 2020 | 48 | 2020 |
TrackSigFreq: subclonal reconstructions based on mutation signatures and allele frequencies CF Harrigan, Y Rubanova, Q Morris, A Selega PACIFIC SYMPOSIUM ON BIOCOMPUTING 2020, 238-249, 2019 | 13 | 2019 |
TrackSig: reconstructing evolutionary trajectories of mutations in cancer Y Rubanova, R Shi, CF Harrigan, R Li, J Wintersinger, N Sahin, ... BioRxiv, 260471, 2018 | 8 | 2018 |
Activating mTOR mutations are detrimental in nutrient-poor conditions AA Bielska, CF Harrigan, YJ Kyung, Q Morris, W Palm, CB Thompson Cancer research 82 (18), 3263-3274, 2022 | 7 | 2022 |
PCAWG Evolution and Heterogeneity Working Group, Quaid Morris, and PCAWG Consortium. Reconstructing evolutionary trajectories of mutation signature activities in cancer using … Y Rubanova, R Shi, CF Harrigan, R Li, J Wintersinger, N Sahin, ... Nature Communications 11 (1), 731, 2020 | 7 | 2020 |
Whole slide Imaging Mass Cytometry allows the rapid profiling of the immune landscape of histopathologically aggressive prostate tumors JL Gorman, LY Liu, JP Hartig, N Parsotam, A Khoo, V Ignatchenko, ... Cancer Research 84 (6_Supplement), 5561-5561, 2024 | | 2024 |
Bacterial ADP-heptose initiates a revival stem cell program in the intestinal epithelium S Goyal, CX Guo, A Ranger, DK Tsang, O Singh, CF Harrigan, O Zaslaver, ... bioRxiv, 2024.01. 15.575749, 2024 | | 2024 |
Author Correction: Reconstructing evolutionary trajectories of mutation signature activities in cancer using TrackSig Y Rubanova, R Shi, CF Harrigan, R Li, J Wintersinger, N Sahin, ... nature communications 13 (1), 7567, 2022 | | 2022 |
Regional mutational signature activities in cancer genomes C Timmons, Q Morris, CF Harrigan PLOS Computational Biology 18 (12), e1010733, 2022 | | 2022 |
Contrastive RNA Representation Learning Through Maximizing Mutual Information Between Splice Isoforms P Fradkin, R Shi, K Isaev, CF Harrigan, Q Morris, B Wang, B Frey, LJ Lee ICLR 2024 Workshop on Generative and Experimental Perspectives for …, 0 | | |