Pedro Mendes

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Douglas KellUniversity of LiverpoolVerified email at liv.ac.uk
Kieran SmallboneMCISB / Mathematics / Computer Science, University of ManchesterVerified email at manchester.ac.uk
Lloyd W. SumnerUniversity of Missouri, Biochemistry Dept, Christopher S. Bond Life Sciences Center, MU MetabolomicsVerified email at missouri.edu
Stefan HoopsResearch Associate Professor, Biocomplexity Institute & Initiative, University of VirginiaVerified email at virginia.edu
Jürgen PahleIndependent Group Leader, Heidelberg University, GermanyVerified email at bioquant.uni-heidelberg.de
Neil SwainstonUniversity of LiverpoolVerified email at liverpool.ac.uk
Alberto de la FuenteQatar Biomedical Research InstituteVerified email at hbku.edu.qa
Richard DixonDistinguished Professor of Biology, University of North TexasVerified email at unt.edu
Hans WesterhoffUniversity of Amsterdam, VU University Amsterdam, University of ManchesterVerified email at manchester.ac.uk
Julio R. BangaResearch Professor, IIM-CSIC, Vigo (Spain)Verified email at csic.es
Joseph Olufemi DadaProfessor of Electrical Engineering, Afe Babalola University, Ado-EkitiVerified email at abuad.edu.ng
Oliver FiehnUC DavisVerified email at ucdavis.edu
Snoep JLStellenbosch University; Manchester University; Vrije Universiteit AmsterdamVerified email at sun.ac.za
Vladimir ShulaevProfessor, University of North TexasVerified email at unt.edu
Norman W. PatonProfessor of Computer Science, University of ManchesterVerified email at cs.man.ac.uk
Vangelis SimeonidisSenior Project Manager, PATHVerified email at path.org
Warwick DunnUniversity of Birmingham, UKVerified email at bham.ac.uk
Paul DobsonScruffy Biotech LtdVerified email at manchester.ac.uk
Naglis MalysSenior Research Fellow, University of NottinghamVerified email at nottingham.ac.uk
Kazuki SaitoDirector, RIKEN CSRS; Director, Plant Mol Sci Ctr, Chiba UnivVerified email at faculty.chiba-u.jp

Pedro Mendes

University of Connecticut

Verified email at uchc.edu - Homepage

systems biology bioinformatics computational biology modeling simulation


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The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models M Hucka, A Finney, HM Sauro, H Bolouri, JC Doyle, H Kitano, AP Arkin, ... Bioinformatics 19 (4), 524-531, 2003	3413	2003
COPASI—a complex pathway simulator S Hoops, S Sahle, R Gauges, C Lee, J Pahle, N Simus, M Singhal, L Xu, ... Bioinformatics 22 (24), 3067-3074, 2006	2402	2006
Plant metabolomics: large-scale phytochemistry in the functional genomics era LW Sumner, P Mendes, RA Dixon Phytochemistry 62 (6), 817-836, 2003	1252	2003
Parameter estimation in biochemical pathways: a comparison of global optimization methods CG Moles, P Mendes, JR Banga Genome research 13 (11), 2467-2474, 2003	1042	2003
A community-driven global reconstruction of human metabolism I Thiele, N Swainston, RMT Fleming, A Hoppe, S Sahoo, MK Aurich, ... Nature biotechnology 31 (5), 419-425, 2013	986	2013
GEPASI: a software package for modelling the dynamics, steady states and control of biochemical and other systems P Mendes Bioinformatics 9 (5), 563-571, 1993	865	1993
Non-linear optimization of biochemical pathways: applications to metabolic engineering and parameter estimation. P Mendes, D Kell Bioinformatics (Oxford, England) 14 (10), 869-883, 1998	838	1998
Potential of metabolomics as a functional genomics tool RJ Bino, RD Hall, O Fiehn, J Kopka, K Saito, J Draper, BJ Nikolau, ... Trends in plant science 9 (9), 418-425, 2004	828	2004
Biochemistry by numbers: simulation of biochemical pathways with Gepasi 3 P Mendes Trends in biochemical sciences 22 (9), 361-363, 1997	751	1997
A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology MJ Herrgård, N Swainston, P Dobson, WB Dunn, KY Arga, M Arvas, ... Nature biotechnology 26 (10), 1155-1160, 2008	618	2008
Minimum information requested in the annotation of biochemical models (MIRIAM) N Le Novère, A Finney, M Hucka, US Bhalla, F Campagne, ... Nature biotechnology 23 (12), 1509-1515, 2005	614	2005
Discovery of meaningful associations in genomic data using partial correlation coefficients A De La Fuente, N Bing, I Hoeschele, P Mendes Bioinformatics 20 (18), 3565-3574, 2004	597	2004
Myo-inositol oxygenase offers a possible entry point into plant ascorbate biosynthesis A Lorence, BI Chevone, P Mendes, CL Nessler Plant Physiology 134 (3), 1200-1205, 2004	418	2004
ChEBI in 2016: Improved services and an expanding collection of metabolites J Hastings, G Owen, A Dekker, M Ennis, N Kale, V Muthukrishnan, ... Nucleic acids research 44 (D1), D1214-D1219, 2016	404	2016
Metabolic profiling of Medicago truncatula cell cultures reveals the effects of biotic and abiotic elicitors on metabolism CD Broeckling, DV Huhman, MA Farag, JT Smith, GD May, P Mendes, ... Journal of experimental botany 56 (410), 323-336, 2005	398	2005
A hybrid approach for efficient and robust parameter estimation in biochemical pathways M Rodriguez-Fernandez, P Mendes, JR Banga Biosystems 83 (2-3), 248-265, 2006	377	2006
Gene networks: how to put the function in genomics P Brazhnik, A de la Fuente, P Mendes TRENDS in Biotechnology 20 (11), 467-472, 2002	357	2002
The metabolomics standards initiative (MSI) O Fiehn, D Robertson, J Griffin, M van der Werf, B Nikolau, N Morrison, ... Metabolomics 3 (3), 175-178, 2007	345	2007
A proposed framework for the description of plant metabolomics experiments and their results H Jenkins, N Hardy, M Beckmann, J Draper, AR Smith, J Taylor, O Fiehn, ... Nature biotechnology 22 (12), 1601-1606, 2004	311	2004
Artificial gene networks for objective comparison of analysis algorithms P Mendes, W Sha, K Ye Bioinformatics 19 (suppl_2), ii122-ii129, 2003	280	2003

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