Jens Lagergren

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Lars ArvestadStockholm University; Dept of Mathematics, and Swedish e-Science Research CenterVerified email at math.su.se
Mike HallettWestern UniversityVerified email at concordia.ca
Joakim LundebergSciLifeLab, KTH Royal Institute of TechnologyVerified email at scilifelab.se
Johan HartmanDept of Oncology-Pathology, Karolinska InstitutetVerified email at ki.se
Alessandro PanconesiComputer Science - Sapienza, University of RomeVerified email at di.uniroma1.it
Hossein FarahaniLecturer, University of British ColumbiaVerified email at ubc.ca
Viggo KannProfessor i datalogi, KTHVerified email at kth.se
Wyeth WassermanProfessor of Medical Genetics, University of British ColumbiaVerified email at cmmt.ubc.ca
David Fernández-BacaProfessor of Computer Science, Iowa State UniversityVerified email at iastate.edu
Mattias HöglundDepartment of Oncology, Clinical Sciences, Lund University, SwedenVerified email at med.lu.se
Pekka ParviainenDepartment of Informatics, University of BergenVerified email at uib.no
Sanjeev KhannaHenry Salvatori Professor of Computer Science, University of PennsylvaniaVerified email at cis.upenn.edu
Benny ChorProfessor of Computer Science, Tel-Aviv UniversityVerified email at cs.tau.ac.il
Vincent DaubincnrsVerified email at univ-lyon1.fr
Johan HåstadProfessor i teoretisk datalogi, KTHVerified email at kth.se
Mattias FrånbergPhD Student, Karolinska InstituteVerified email at ki.se
Niko BeerenwinkelProfessor of Computational Biology, ETH ZurichVerified email at bsse.ethz.ch
Bruno CourcelleProfesseur émérite , Bordeaux, InformatiqueVerified email at labri.fr
David BryantUniversity of OtagoVerified email at otago.ac.nz
Olof EmanuelssonAssociate professor, Royal Institute of Technology (KTH), StockholmVerified email at kth.se

Jens Lagergren

KTH, Royal Institute of Technology

Verified email at scilifelab.se - Homepage

Machine Learning Computational Biology Single-Cell Analysis Cancer


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Easy problems for tree-decomposable graphs S Arnborg, J Lagergren, D Seese Journal of Algorithms 12 (2), 308-340, 1991	1115	1991
Spatial maps of prostate cancer transcriptomes reveal an unexplored landscape of heterogeneity E Berglund, J Maaskola, N Schultz, S Friedrich, M Marklund, ... Nature communications 9 (1), 2419, 2018	466	2018
SUMOylation mediates the nuclear translocation and signaling of the IGF-1 receptor B Sehat, A Tofigh, Y Lin, E Trocmé, U Liljedahl, J Lagergren, O Larsson Science signaling 3 (108), ra10-ra10, 2010	278	2010
Bayesian gene/species tree reconciliation and orthology analysis using MCMC L Arvestad, AC Berglund, J Lagergren, B Sennblad Bioinformatics-Oxford 19 (1), 7-15, 2003	221	2003
Simultaneous Bayesian gene tree reconstruction and reconciliation analysis Ö Åkerborg, B Sennblad, L Arvestad, J Lagergren Proceedings of the National Academy of Sciences 106 (14), 5714-5719, 2009	212	2009
Simultaneous identification of duplications and lateral gene transfers A Tofigh, M Hallett, J Lagergren IEEE/ACM transactions on computational biology and bioinformatics 8 (2), 517-535, 2010	198	2010
Efficient algorithms for lateral gene transfer problems MT Hallett, J Lagergren Proceedings of the fifth annual international conference on Computational …, 2001	198	2001
Gene tree reconstruction and orthology analysis based on an integrated model for duplications and sequence evolution L Arvestad, AC Berglund, J Lagergren, B Sennblad Proceedings of the eighth annual international conference on Research in …, 2004	166	2004
Evolutionary history of metastatic breast cancer reveals minimal seeding from axillary lymph nodes I Ullah, GM Karthik, A Alkodsi, U Kjällquist, G Stålhammar, J Lövrot, ... The Journal of clinical investigation 128 (4), 1355-1370, 2018	150	2018
New algorithms for the duplication-loss model MT Hallett, J Lagergren Proceedings of the fourth annual international conference on Computational …, 2000	148	2000
On the Hardness of Approximating Max k-Cut and Its Dual. V Kann, S Khanna, J Lagergren, A Panconesi ISTCS, 61-67, 1996	128	1996
A-to-I editing of microRNAs in the mammalian brain increases during development Y Ekdahl, HS Farahani, M Behm, J Lagergren, M Öhman Genome research 22 (8), 1477-1487, 2012	126	2012
Identification of functional clusters of transcription factor binding motifs in genome sequences: the MSCAN algorithm Ö Johansson, W Alkema, WW Wasserman, J Lagergren Bioinformatics 19 (suppl_1), i169-i176, 2003	122	2003
ADARs and editing: the role of A-to-I RNA modification in cancer progression K Fritzell, LD Xu, J Lagergren, M Öhman Seminars in cell & developmental biology 79, 123-130, 2018	109	2018
Problems easy for tree-decomposable graphs extended abstract S Arnborg, J Lagergren, D Seese International Colloquium on Automata, Languages, and Programming, 38-51, 1988	109	1988
The gene evolution model and computing its associated probabilities L Arvestad, J Lagergren, B Sennblad Journal of the ACM (JACM) 56 (2), 1-44, 2009	107	2009
A Bayesian method for analyzing lateral gene transfer J Sjöstrand, A Tofigh, V Daubin, L Arvestad, B Sennblad, J Lagergren Systematic biology 63 (3), 409-420, 2014	102	2014
Genome-wide survey for biologically functional pseudogenes Ö Svensson, L Arvestad, J Lagergren PLoS computational biology 2 (5), e46, 2006	101	2006
Simultaneous identification of duplications and lateral transfers M Hallett, J Lagergren, A Tofigh Proceedings of the eighth annual international conference on Research in …, 2004	100	2004
MSCAN: identification of functional clusters of transcription factor binding sites WBL Alkema, Ö Johansson, J Lagergren, WW Wasserman Nucleic acids research 32 (suppl_2), W195-W198, 2004	90	2004

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