Prediction of 492 human protein kinase substrate specificities J Safaei, J Maňuch, A Gupta, L Stacho, S Pelech Proteome science 9 (S1), S6, 2011 | 44 | 2011 |

Two lower bounds for self-assemblies at temperature 1 J Maňuch, L Stacho, C Stoll Journal of Computational Biology 17 (6), 841-852, 2010 | 36 | 2010 |

Linearization of ancestral multichromosomal genomes J Maňuch, M Patterson, R Wittler, C Chauve, E Tannier BMC bioinformatics 13 (19), S11, 2012 | 32 | 2012 |

Structure-approximating inverse protein folding problem in the 2D HP model A Gupta, J Maňuch, L Stacho Journal of Computational Biology 12 (10), 1328-1345, 2005 | 29 | 2005 |

Characterization of a word by its subwords J Maňuch Developments In Language Theory: Foundations, Applications, and Perspectives …, 2000 | 25 | 2000 |

Less haste, less waste: on recycling and its limits in strand displacement systems A Condon, AJ Hu, J Maňuch, C Thachuk Interface focus 2 (4), 512-521, 2012 | 23 | 2012 |

An algorithm for the energy barrier problem without pseudoknots and temporary arcs C Thachuk, J Maňuch, A Rafiey, LA Mathieson, L Stacho, A Condon Biocomputing 2010, 108-119, 2010 | 22 | 2010 |

Fitting protein chains to cubic lattice is NP-complete JÁN MAŇUCH, DR Gaur Journal of bioinformatics and computational biology 6 (01), 93-106, 2008 | 19 | 2008 |

NP-completeness of the energy barrier problem without pseudoknots and temporary arcs J Maňuch, C Thachuk, L Stacho, A Condon Natural Computing 10 (1), 391-405, 2011 | 18 | 2011 |

On the gapped consecutive-ones property C Chauve, J Maňuch, M Patterson Electronic Notes in Discrete Mathematics 34, 121-125, 2009 | 17 | 2009 |

NP-completeness of the direct energy barrier problem without pseudoknots J Maňuch, C Thachuk, L Stacho, A Condon International Workshop on DNA-Based Computers, 106-115, 2009 | 14* | 2009 |

On defect effect of bi-infinite words J Karhumäki, J Maňuch, W Plandowski International Symposium on Mathematical Foundations of Computer Science, 674-682, 1998 | 14 | 1998 |

Consistency of sequence-based gene clusters R Wittler, J Maňuch, M Patterson, J Stoye Journal of Computational Biology 18 (9), 1023-1039, 2011 | 13 | 2011 |

The odd-distance plane graph H Ardal, J Maňuch, M Rosenfeld, S Shelah, L Stacho Discrete & Computational Geometry 42 (2), 132-141, 2009 | 13 | 2009 |

Turing universality of step-wise and stage assembly at temperature 1 B Behsaz, J Maňuch, L Stacho International Workshop on DNA-Based Computers, 1-11, 2012 | 12 | 2012 |

On conjugacy of languages J Cassaigne, J Karhumäki, J Maňuch RAIRO-Theoretical Informatics and Applications 35 (6), 535-550, 2001 | 12 | 2001 |

Step-assembly with a constant number of tile types J Maňuch, L Stacho, C Stoll International Symposium on Algorithms and Computation, 954-963, 2009 | 11 | 2009 |

Characterization of the existence of galled-tree networks A Gupta, JÁN MAŇUCH, X Zhao, L Stacho Journal of bioinformatics and computational biology 4 (06), 1309-1328, 2006 | 11 | 2006 |

Inverse protein folding in 2D HP model A Gupta, J Manuch, L Stacho Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004 …, 2004 | 11 | 2004 |

A defect theorem for bi-infinite words J Karhumäki, J Maňuch, W Plandowski Theoretical computer science 292 (1), 237-243, 2003 | 11 | 2003 |