Suwisa Keawphan
Suwisa Keawphan
University of Turku, Turku Center for Computer Science, Department of Future Technologies
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An expanded evaluation of protein function prediction methods shows an improvement in accuracy
Y Jiang, TR Oron, WT Clark, AR Bankapur, D D’Andrea, R Lepore, ...
Genome biology 17, 1-19, 2016
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ...
Genome biology 20, 1-23, 2019
UTurku: drug named entity recognition and drug-drug interaction extraction using SVM classification and domain knowledge
J Björne, S Kaewphan, T Salakoski
Second Joint Conference on Lexical and Computational Semantics (* SEM …, 2013
Lysophosphatidic acid and sphingosine-1-phosphate promote morphogenesis and block invasion of prostate cancer cells in three-dimensional organotypic models
V Härmä, M Knuuttila, J Virtanen, T Mirtti, P Kohonen, P Kovanen, ...
Oncogene 31 (16), 2075-2089, 2012
Syntactic analyses and named entity recognition for PubMed and PubMed Central—up-to-the-minute
K Hakala, S Kaewphan, T Salakoski, F Ginter
Proceedings of the 15th Workshop on Biomedical Natural Language Processing …, 2016
Cell line name recognition in support of the identification of synthetic lethality in cancer from text
S Kaewphan, S Van Landeghem, T Ohta, Y Van de Peer, F Ginter, ...
Bioinformatics 32 (2), 276-282, 2016
Neural network and random forest models in protein function prediction
K Hakala, S Kaewphan, J Björne, F Mehryary, H Moen, M Tolvanen, ...
IEEE/ACM Transactions on Computational Biology and Bioinformatics 19 (3 …, 2020
UTU: Disease mention recognition and normalization with CRFs and vector space representations
S Kaewphan, K Hakala, F Ginter
Proceedings of the 8th international workshop on semantic evaluation …, 2014
Wide-scope biomedical named entity recognition and normalization with CRFs, fuzzy matching and character level modeling
S Kaewphan, K Hakala, N Miekka, T Salakoski, F Ginter
Database 2018, bay096, 2018
End-to-end system for bacteria habitat extraction
F Mehryary, K Hakala, S Kaewphan, J Björne, T Salakoski, F Ginter
BioNLP 2017, 80-90, 2017
Integrating large-scale text mining and co-expression networks: Targeting NADP (H) metabolism in E. coli with event extraction
S Kaewphan, S Kreula, S Van Landeghem, Y Van de Peer, P Jones, ...
Proceedings of the Third Workshop on Building and Evaluating Resources for …, 2012
TurkuNLP entry for interactive Bio-ID assignment
S Kaewphan, F Mehryary, K Hakala, T Salakoski, F Ginter
Proceedings of the BioCreative VI Workshop, 32-35, 2017
Evaluating large-scale text mining applications beyond the traditional numeric performance measures
S Van Landeghem, S Kaewphan, F Ginter, Y Van de Peer
Proceedings of the 2013 Workshop on Biomedical Natural Language Processing …, 2013
Cyevex: literature-scale network integration and visualization through cytoscape
K Hakala, S Van Landeghem, S Kaewphan, T Salakoski, Y Van de Peer, ...
Proc. SMBM 12, 91-96, 2012
Finding novel relationships with integrated gene-gene association network analysis of Synechocystis sp. PCC 6803 using species-independent text-mining
SM Kreula, S Kaewphan, F Ginter, PR Jones
PeerJ 6, e4806, 2018
Filtering large-scale event collections using a combination of supervised and unsupervised learning for event trigger classification
F Mehryary, S Kaewphan, K Hakala, F Ginter
Journal of Biomedical Semantics 7, 1-13, 2016
Hypothesis generation in large-scale event networks
K Hakala, F Mehryary, S Kaewphan, F Ginter, F Rinaldi, K Jin-Dong
Proceedings of the 5th International Symposium on Languages in Biology and …, 2013
Eliminating Incorrect Events from Large-Scale Event Networks by Trigger Word Clustering and Pruning
F Mehryary, S Kaewphan, K Hakala, F Ginter
The University of Turku Graduate School (UTUGS), University of Turku, Finland, 2013
Availability: This version is available at: http://porto. polito. it/2649752/since: September 2016
Y Jiang, TR Oron, WT Clark, AR Bankapur, D D’Andrea, R Lepore, ...
Third Workshop on Building and Evaluating Resources for Biomedical Text Mining Workshop Programme
J Tsujii, C Mihăilă, RT Batista-Navarro, S Ananiadou, S Kaewphan, ...
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