Manolis Kellis
Manolis Kellis
Professor of Computer Science, MIT and Broad Institute
Verified email at mit.edu - Homepage
Title
Cited by
Cited by
Year
An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57-74, 2012
10854*2012
Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
M Guttman, I Amit, M Garber, C French, MF Lin, D Feldser, M Huarte, ...
Nature 458 (7235), 223-227, 2009
36852009
GENCODE: the reference human genome annotation for The ENCODE Project
J Harrow, A Frankish, JM Gonzalez, E Tapanari, M Diekhans, ...
Genome research 22 (9), 1760-1774, 2012
35622012
Integrative analysis of 111 reference human epigenomes
A Kundaje, W Meuleman, J Ernst, M Bilenky, A Yen, A Heravi-Moussavi, ...
Nature 518 (7539), 317-330, 2015
34462015
The genotype-tissue expression (GTEx) project
J Lonsdale, J Thomas, M Salvatore, R Phillips, E Lo, S Shad, R Hasz, ...
Nature genetics 45 (6), 580-585, 2013
33912013
The Genotype-Tissue Expression (GTEx) pilot analysis: Multitissue gene regulation in humans
GTEx Consortium
Science 348 (6235), 648-660, 2015
26182015
Mapping and analysis of chromatin state dynamics in nine human cell types
J Ernst, P Kheradpour, TS Mikkelsen, N Shoresh, LD Ward, CB Epstein, ...
Nature 473 (7345), 43-49, 2011
25752011
Transcriptional regulatory code of a eukaryotic genome
CT Harbison, DB Gordon, TI Lee, NJ Rinaldi, KD Macisaac, TW Danford, ...
Nature 431 (7004), 99-104, 2004
24542004
Genome sequence, comparative analysis and haplotype structure of the domestic dog
K Lindblad-Toh, CM Wade, TS Mikkelsen, EK Karlsson, DB Jaffe, ...
Nature 438 (7069), 803-819, 2005
24502005
Histone modifications at human enhancers reflect global cell-type-specific gene expression
ND Heintzman, GC Hon, RD Hawkins, P Kheradpour, A Stark, LF Harp, ...
Nature 459 (7243), 108-112, 2009
22242009
Systematic discovery of regulatory motifs in human promoters and 3′ UTRs by comparison of several mammals
X Xie, J Lu, EJ Kulbokas, TR Golub, V Mootha, K Lindblad-Toh, ...
Nature 434 (7031), 338-345, 2005
21802005
Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila
J Brennecke, AA Aravin, A Stark, M Dus, M Kellis, R Sachidanandam, ...
Cell 128 (6), 1089-1103, 2007
21152007
Sequencing and comparison of yeast species to identify genes and regulatory elements
M Kellis, N Patterson, M Endrizzi, B Birren, ES Lander
Nature 423 (6937), 241, 2003
20572003
Evolution of genes and genomes on the Drosophila phylogeny
Drosophila 12 Genomes Consortium
Nature 450 (7167), 203, 2007
19192007
Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype
O Jaillon, JM Aury, F Brunet, JL Petit, N Stange-Thomann, E Mauceli, ...
Nature 431 (7011), 946-957, 2004
18792004
HaploReg: a resource for exploring chromatin states, conservation, and regulatory motif alterations within sets of genetically linked variants
LD Ward, M Kellis
Nucleic acids research 40 (D1), D930-D934, 2012
17452012
The genome sequence of the filamentous fungus Neurospora crassa
JE Galagan, SE Calvo, KA Borkovich, EU Selker, ND Read, D Jaffe, ...
Nature 422 (6934), 859-868, 2003
17122003
Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae
M Kellis, BW Birren, ES Lander
Nature 428 (6983), 617-624, 2004
16122004
ChromHMM: automating chromatin-state discovery and characterization
J Ernst, M Kellis
Nature methods 9 (3), 215-216, 2012
14682012
ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
SG Landt, GK Marinov, A Kundaje, P Kheradpour, F Pauli, S Batzoglou, ...
Genome research 22 (9), 1813-1831, 2012
13702012
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