Mingfu Shao
Mingfu Shao
Department of Computer Science and Engineerings, The Pennsylvania State University
Verified email at psu.edu - Homepage
TitleCited byYear
Approximating the edit distance for genomes with duplicate genes under DCJ, insertion and deletion
M Shao, Y Lin
BMC bioinformatics 13 (19), S13, 2012
362012
Accurate assembly of transcripts through phase-preserving graph decomposition
M Shao, C Kingsford
Nature biotechnology 35 (12), 1167, 2017
262017
An exact algorithm to compute the double-cut-and-join distance for genomes with duplicate genes
M Shao, Y Lin, BME Moret
Journal of Computational Biology 22 (5), 425-435, 2015
202015
An exact algorithm to compute the DCJ distance for genomes with duplicate genes
M Shao, Y Lin, B Moret
International Conference on Research in Computational Molecular Biology, 280-292, 2014
202014
Comparing genomes with rearrangements and segmental duplications
M Shao, BME Moret
Bioinformatics 31 (12), i329-i338, 2015
172015
A fast and exact algorithm for the exemplar breakpoint distance
M Shao, BME Moret
Journal of Computational Biology 23 (5), 337-346, 2016
132016
Sorting genomes with rearrangements and segmental duplications through trajectory graphs
M Shao, Y Lin, B Moret
BMC Bioinformatics 14 (Suppl 15), S9, 2013
122013
On computing breakpoint distances for genomes with duplicate genes
M Shao, BME Moret
International Conference on Research in Computational Molecular Biology, 189-203, 2016
112016
Incorporating Ab Initio energy into threading approaches for protein structure prediction
M Shao, S Wang, C Wang, X Yuan, SC Li, W Zheng, D Bu
BMC bioinformatics 12 (Suppl 1), S54, 2011
92011
DeepBound: accurate identification of transcript boundaries via deep convolutional neural fields
M Shao, J Ma, S Wang
Bioinformatics 33 (14), i267-i273, 2017
52017
Theory and a heuristic for the minimum path flow decomposition problem
M Shao, C Kingsford
IEEE/ACM transactions on computational biology and bioinformatics 16 (2 …, 2017
42017
A maximum-likelihood approach for building cell-type trees by lifting
NU Nair, L Hunter, M Shao, P Grnarova, Y Lin, P Bucher, BME Moret
BMC genomics 17 (1), 14, 2016
32016
SQUID: transcriptomic structural variation detection from RNA-seq
C Ma, M Shao, C Kingsford
Genome biology 19 (1), 52, 2018
22018
Scallop enables accurate assembly of transcripts through phasing-preserving graph decomposition
M Shao, C Kingsford
BioRxiv, 123612, 2017
12017
Efficient heuristic for decomposing a flow with minimum number of paths
M Shao, C Kingsford
bioRxiv, 087759, 2016
12016
Improving protein threading accuracy via combining local and global potential using treecrf model
H Zhang, M Shao, C Wang, J Zhu, WM Zheng, D Bu
arXiv preprint arXiv:1509.03434, 2015
12015
Models and algorithms for comparative genomics
M Shao
EPFL, 2015
12015
On the DCJ median problem
M Shao, BME Moret
Symposium on Combinatorial Pattern Matching, 273-282, 2014
12014
Context-Aware Seeds for Read Mapping
H Xin, M Shao, C Kingsford
BioRxiv, 643072, 2019
2019
Quantifying the Benefit Offered by Transcript Assembly on Single-Molecule Long Reads
LH Tung, M Shao, C Kingsford
BioRxiv, 632703, 2019
2019
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