Thomas Shafee
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Transcriptomics technologies
R Lowe, N Shirley, M Bleackley, S Dolan, T Shafee
PLoS computational biology 13 (5), e1005457, 2017
The evolution, function and mechanisms of action for plant defensins
K Parisi, TMA Shafee, P Quimbar, NL van der Weerden, MR Bleackley, ...
Seminars in cell & developmental biology 88, 107-118, 2019
Convergent evolution of defensin sequence, structure and function
TMA Shafee, FT Lay, TK Phan, MA Anderson, MD Hulett
Cellular and Molecular Life Sciences 74, 663-682, 2017
The defensins consist of two independent, convergent protein superfamilies
TMA Shafee, FT Lay, MD Hulett, MA Anderson
Molecular biology and evolution 33 (9), 2345-2356, 2016
Molecular basis for the production of cyclic peptides by plant asparaginyl endopeptidases
MA Jackson, EK Gilding, T Shafee, KS Harris, Q Kaas, S Poon, K Yap, ...
Nature communications 9 (1), 2411, 2018
Wikidata as a knowledge graph for the life sciences
A Waagmeester, G Stupp, S Burgstaller-Muehlbacher, BM Good, M Griffith, ...
Elife 9, e52614, 2020
Evolution of Wikipedia’s medical content: past, present and future
T Shafee, G Masukume, L Kipersztok, D Das, M Häggström, J Heilman
J Epidemiol Community Health 71 (11), 1122-1129, 2017
Dynamic interaction of Y RNAs with chromatin and initiation proteins during human DNA replication
AT Zhang, AR Langley, CP Christov, E Kheir, T Shafee, TJ Gardiner, ...
Journal of cell science 124 (12), 2058-2069, 2011
The plant defensin NaD1 introduces membrane disorder through a specific interaction with the lipid, phosphatidylinositol 4,5 bisphosphate
JA Payne, MR Bleackley, TH Lee, TM Shafee, IK Poon, MD Hulett, ...
Biochimica et Biophysica Acta biomembranes, 2016
Eukaryotic and prokaryotic gene structure
T Shafee, R Lowe
WikiJournal of Medicine 4 (1), 2, 2017
Salt-tolerant antifungal and antibacterial activities of the corn defensin ZmD32
BK Kerenga, JA McKenna, PJ Harvey, P Quimbar, D Garcia-Ceron, ...
Frontiers in Microbiology 10, 795, 2019
Wikidata: A large-scale collaborative ontological medical database
H Turki, T Shafee, MAH Taieb, MB Aouicha, D Vrandečić, D Das, H Hamdi
Journal of Biomedical Informatics 99, 103292, 2019
Arabinogalactan-proteins of Zostera marina L. contain unique glycan structures and provide insight into adaption processes to saline environments
L Pfeifer, T Shafee, KL Johnson, A Bacic, B Classen
Scientific reports 10 (1), 8232, 2020
Nicotiana alata defensin chimeras reveal differences in the mechanism of fungal and tumor cell killing and an enhanced antifungal variant
MR Bleackley, JAE Payne, BME Hayes, T Durek, DJ Craik, TMA Shafee, ...
Antimicrobial Agents and Chemotherapy 60 (10), 6302-6312, 2016
Fasciclin-Like Arabinogalactan-Protein 16 (FLA16) Is Required for Stem Development in Arabidopsis
E Liu, CP MacMillan, T Shafee, Y Ma, J Ratcliffe, A Van de Meene, ...
Frontiers in plant science 11, 615392, 2020
Medical journals and Wikipedia: a global health matter
G Masukume, L Kipersztok, D Das, TMA Shafee, MR Laurent, JM Heilman
Lancet Global Health 4 (11), e791, 2016
Biosynthesis of Cyclotides
T Shafee, K Harris, M Anderson
Advances in Botanical Research 76 (Plant Cyclotides. Editor: Craik, D), 227–269, 2015
A quantitative map of protein sequence space for the cis-defensin superfamily
T Shafee, MA Anderson
Bioinformatics 35 (5), 743-752, 2019
Evolution of cnidarian trans‐defensins: Sequence, structure and exploration of chemical space
ML Mitchell, T Shafee, AT Papenfuss, RS Norton
Proteins: Structure, Function, and Bioinformatics 87 (7), 551-560, 2019
Representing COVID-19 information in collaborative knowledge graphs: the case of Wikidata
H Turki, MA Hadj Taieb, T Shafee, T Lubiana, D Jemielniak, MB Aouicha, ...
Semantic Web 13 (2), 233-264, 2022
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