| CTCF establishes discrete functional chromatin domains at the Hox clusters during differentiation V Narendra, PP Rocha, D An, R Raviram, JA Skok, EO Mazzoni, ... Science 347 (6225), 1017-1021, 2015 | 596 | 2015 |
| Circular ecDNA promotes accessible chromatin and high oncogene expression S Wu, KM Turner, N Nguyen, R Raviram, M Erb, J Santini, J Luebeck, ... Nature 575 (7784), 699-703, 2019 | 383 | 2019 |
| Single-nucleus analysis of accessible chromatin in developing mouse forebrain reveals cell-type-specific transcriptional regulation S Preissl, R Fang, H Huang, Y Zhao, R Raviram, DU Gorkin, Y Zhang, ... Nature neuroscience 21 (3), 432-439, 2018 | 299 | 2018 |
| Capturing the onset of PRC2-mediated repressive domain formation O Oksuz, V Narendra, CH Lee, N Descostes, G LeRoy, R Raviram, ... Molecular cell 70 (6), 1149-1162. e5, 2018 | 236 | 2018 |
| NAD metabolic dependency in cancer is shaped by gene amplification and enhancer remodelling S Chowdhry, C Zanca, U Rajkumar, T Koga, Y Diao, R Raviram, F Liu, ... Nature 569 (7757), 570-575, 2019 | 180 | 2019 |
| Cohesin loss alters adult hematopoietic stem cell homeostasis, leading to myeloproliferative neoplasms J Mullenders, B Aranda-Orgilles, P Lhoumaud, M Keller, J Pae, K Wang, ... Journal of Experimental Medicine 212 (11), 1833-1850, 2015 | 168 | 2015 |
| CRISPR-dCas9 and sgRNA scaffolds enable dual-colour live imaging of satellite sequences and repeat-enriched individual loci Y Fu, PP Rocha, VM Luo, R Raviram, Y Deng, EO Mazzoni, JA Skok Nature communications 7 (1), 11707, 2016 | 154 | 2016 |
| Dynamic reorganization of the genome shapes the recombination landscape in meiotic prophase L Patel, R Kang, SC Rosenberg, Y Qiu, R Raviram, S Chee, R Hu, B Ren, ... Nature structural & molecular biology 26 (3), 164-174, 2019 | 137 | 2019 |
| MED12 regulates HSC-specific enhancers independently of mediator kinase activity to control hematopoiesis B Aranda-Orgilles, R Saldaņa-Meyer, E Wang, E Trompouki, A Fassl, ... Cell stem cell 19 (6), 784-799, 2016 | 112 | 2016 |
| MAPS: Model-based analysis of long-range chromatin interactions from PLAC-seq and HiChIP experiments I Juric, M Yu, A Abnousi, R Raviram, R Fang, Y Zhao, Y Zhang, Y Qiu, ... PLoS computational biology 15 (4), e1006982, 2019 | 98 | 2019 |
| Low-grade astrocytoma mutations in IDH1, P53, and ATRX cooperate to block differentiation of human neural stem cells via repression of SOX2 AS Modrek, D Golub, T Khan, D Bready, J Prado, C Bowman, J Deng, ... Cell reports 21 (5), 1267-1280, 2017 | 94 | 2017 |
| 4C-ker: a method to reproducibly identify genome-wide interactions captured by 4C-Seq experiments R Raviram, PP Rocha, CL Müller, ER Miraldi, S Badri, Y Fu, E Swanzey, ... PLoS computational biology 12 (3), e1004780, 2016 | 93 | 2016 |
| Long-range regulation of V (D) J recombination C Proudhon, B Hao, R Raviram, J Chaumeil, JA Skok Advances in immunology 128, 123-182, 2015 | 75 | 2015 |
| Targeting histone acetylation dynamics and oncogenic transcription by catalytic P300/CBP inhibition SJ Hogg, O Motorna, LA Cluse, TM Johanson, HD Coughlan, R Raviram, ... Molecular cell 81 (10), 2183-2200. e13, 2021 | 71 | 2021 |
| Breaking TADs: insights into hierarchical genome organization PP Rocha, R Raviram, R Bonneau, JA Skok Epigenomics 7 (4), 523-526, 2015 | 61 | 2015 |
| Identification of multi-loci hubs from 4C-seq demonstrates the functional importance of simultaneous interactions T Jiang, R Raviram, V Snetkova, PP Rocha, C Proudhon, S Badri, ... Nucleic acids research 44 (18), 8714-8725, 2016 | 50 | 2016 |
| Active and inactive enhancers cooperate to exert localized and long-range control of gene regulation C Proudhon, V Snetkova, R Raviram, C Lobry, S Badri, T Jiang, B Hao, ... Cell reports 15 (10), 2159-2169, 2016 | 48 | 2016 |
| Transcriptional regulatory control of mammalian nephron progenitors revealed by multi-factor cistromic analysis and genetic studies LL O’Brien, Q Guo, E Bahrami-Samani, JS Park, SM Hasso, YJ Lee, ... PLoS Genetics 14 (1), e1007181, 2018 | 43 | 2018 |
| Analysis of 3D genomic interactions identifies candidate host genes that transposable elements potentially regulate R Raviram, PP Rocha, VM Luo, E Swanzey, ER Miraldi, EB Chuong, ... Genome biology 19, 1-19, 2018 | 41 | 2018 |
| Mediator facilitates transcriptional activation and dynamic long-range contacts at the IgH locus during class switch recombination AS Thomas-Claudepierre, I Robert, PP Rocha, R Raviram, E Schiavo, ... Journal of Experimental Medicine 213 (3), 303-312, 2016 | 38 | 2016 |
