| iEnhancer-5Step: identifying enhancers using hidden information of DNA sequences via Chou's 5-step rule and word embedding NQK Le, EKY Yapp, QT Ho, N Nagasundaram, YY Ou, HY Yeh Analytical biochemistry 571, 53-61, 2019 | 126 | 2019 |
| A transformer architecture based on BERT and 2D convolutional neural network to identify DNA enhancers from sequence information NQK Le, QT Ho, TTD Nguyen, YY Ou Briefings in bioinformatics 22 (5), bbab005, 2021 | 118 | 2021 |
| Incorporating deep learning with convolutional neural networks and position specific scoring matrices for identifying electron transport proteins NQK Le, QT Ho, YY Ou Journal of Computational Chemistry 38 (23), 2000-2006, 2017 | 89 | 2017 |
| Deep transformers and convolutional neural network in identifying DNA N6-methyladenine sites in cross-species genomes NQK Le, QT Ho Methods 204, 199-206, 2022 | 75 | 2022 |
| Classifying the molecular functions of Rab GTPases in membrane trafficking using deep convolutional neural networks NQK Le, QT Ho, YY Ou Analytical biochemistry, 2018 | 62 | 2018 |
| DeepETC: A deep convolutional neural network architecture for investigating and classifying electron transport chain's complexes NQK Le, QT Ho, EKY Yapp, YY Ou, HY Yeh Neurocomputing 375, 71-79, 2020 | 55 | 2020 |
| BERT-Promoter: An improved sequence-based predictor of DNA promoter using BERT pre-trained model and SHAP feature selection NQK Le, QT Ho, VN Nguyen, JS Chang Computational Biology and Chemistry 99, 107732, 2022 | 54 | 2022 |
| Identifying SNARE proteins using an alignment-free method based on multiscan convolutional neural network and PSSM profiles QH Kha, QT Ho, NQK Le Journal of Chemical Information and Modeling 62 (19), 4820-4826, 2022 | 51 | 2022 |
| FAD-BERT: improved prediction of FAD binding sites using pre-training of deep bidirectional transformers QT Ho, NQK Le, YY Ou Computers in Biology and Medicine 131, 104258, 2021 | 38 | 2021 |
| Using word embedding technique to efficiently represent protein sequences for identifying substrate specificities of transporters QT Ho, DV Phan, YY Ou Analytical biochemistry 577, 73-81, 2019 | 37 | 2019 |
| GT-Finder: Classify the family of glucose transporters with pre-trained BERT language models SMA Shah, SW Taju, QT Ho, YY Ou Computers in biology and medicine 131, 104259, 2021 | 30 | 2021 |
| TNFPred: Identifying tumor necrosis factors using hybrid features based on word embeddings TTD Nguyen, NQK Le, QT Ho, DV Phan, YY Ou BMC Medical Genomics 13, 1-11, 2020 | 16 | 2020 |
| Using two-dimensional convolutional neural networks for identifying GTP binding sites in Rab proteins NQK Le, QT Ho, YY Ou Journal of Bioinformatics and Computational Biology 17 (01), 1950005, 2019 | 15 | 2019 |
| Use Chou's 5-steps rule with different word embedding types to boost performance of electron transport protein prediction model QT Ho, VD Phan, YY Ou IEEE/ACM Transactions on Computational Biology and Bioinformatics 19 (2 …, 2020 | 10 | 2020 |
| m CNN-ETC: identifying electron transporters and their functional families by using multiple windows scanning techniques in convolutional neural networks with evolutionary … QT Ho, NQK Le, YY Ou Briefings in Bioinformatics 23 (1), bbab352, 2021 | 9 | 2021 |
| Automatic detection of meniscus tears using backbone convolutional neural networks on knee MRI TNK Hung, VPT Vy, NM Tri, LN Hoang, LV Tuan, QT Ho, NQK Le, ... Journal of Magnetic Resonance Imaging 57 (3), 740-749, 2023 | 7 | 2023 |
| MFPS_CNN: Multi‐filter Pattern Scanning from Position‐specific Scoring Matrix with Convolutional Neural Network for Efficient Prediction of Ion Transporters TTD Nguyen, QT Ho, YC Tarn, YY Ou Molecular Informatics 41 (9), 2100271, 2022 | 7 | 2022 |
| Using language representation learning approach to efficiently identify protein complex categories in electron transport chain TTD Nguyen, NQK Le, QT Ho, DV Phan, YY Ou Molecular Informatics 39 (10), 2000033, 2020 | 4 | 2020 |
| Using multiple convolutional window scanning of convolutional neural network for an efficient prediction of ATP‐binding sites in transport proteins TTD Nguyen, S Chen, QT Ho, YY Ou Proteins: Structure, Function, and Bioinformatics 90 (7), 1486-1492, 2022 | 3 | 2022 |
| Recent advances in features generation for membrane protein sequences: From multiple sequence alignment to pre‐trained language models YY Ou, QT Ho, HT Chang Proteomics 23 (23-24), 2200494, 2023 | 1 | 2023 |
Yu-Yen OuProfessor, Department of Computer Science and Engineering, Yuan-Ze UniversityVerified email at saturn.yzu.edu.tw
