Jose C. Clemente

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Rob KnightWolfe Family Chair at Rady Children's; Director, Center for Microbiome Innovation; Professor, UCSDVerified email at ucsd.edu
Jeremiah FaithIcahn School of Medicine at Mount SinaiVerified email at mssm.edu
J Gregory CaporasoNorthern Arizona UniversityVerified email at nau.edu
Benjamin G WuNYU School of MedicineVerified email at nyumc.org
Dan KnightsUniversity of MinnesotaVerified email at umn.edu
Martin BlaserProfessor of Medicine and Microbiology, Rutgers UniversityVerified email at cabm.rutgers.edu
Nan ShenViomeVerified email at viome.com
Justin KuczynskiScientist, Second GenomeVerified email at secondgenome.com
William A WaltersPost-doc, Cornell UniversityVerified email at colorado.edu
Maria Gloria Dominguez-BelloProfessor, Director, NJ Institute for Food, Nutrition and Health, Rutgers UniversityVerified email at rutgers.edu
Luke K UrsellBiota TechnologyVerified email at biota.com
Catherine LozuponeAssociate Professor of Medicine, University of Colorado, DenverVerified email at ucdenver.edu
Antonio GonzálezProgrammer Analyst, UC San DiegoVerified email at ucsd.edu
Dirk GeversJanssen Human Microbiome InstituteVerified email at its.jnj.com
Christian L LauberNationwide Children's HospitalVerified email at nationwidechildrens.org
Graham J BrittonIcahn School of Medicine at Mount SinaiVerified email at mssm.edu
Daniel McDonaldAmerican Gut, Knight Lab, Department of Pediatrics, UCSDVerified email at ucsd.edu
Curtis HuttenhowerDepartment of Biostatistics, Harvard School of Public HealthVerified email at hsph.harvard.edu
Will Van TreurenPhD Microbiology and Immunology, Interface BiosciencesVerified email at interface.bio
Jai Ram RideoutOne CodexVerified email at onecodex.com

Jose C. Clemente

Associate Professor, Icahn School of Medicine at Mount Sinai

Verified email at mssm.edu - Homepage

Microbiome Computational Biology Machine Learning Bioinformatics Immunology


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UCHIME improves sensitivity and speed of chimera detection RC Edgar, BJ Haas, JC Clemente, C Quince, R Knight Bioinformatics 27 (16), 2194-2200, 2011	13574	2011
Structure, function and diversity of the healthy human microbiome Human Microbiome Project Consortium Nature 486 (7402), 207-214, 2012	9625	2012
Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences MGI Langille, J Zaneveld, JG Caporaso, D McDonald, D Knights, ... Nature Biotechnology, 2013	8008	2013
Human gut microbiome viewed across age and geography T Yatsunenko, FE Rey, MJ Manary, I Trehan, MG Dominguez-Bello, ... Nature 486 (7402), 222-227, 2012	7709	2012
Gut microbiota from twins discordant for obesity modulate metabolism in mice VK Ridaura, JJ Faith, FE Rey, J Cheng, AE Duncan, AL Kau, NW Griffin, ... Science 341 (6150), 2013	3974	2013
The impact of the gut microbiota on human health: an integrative view JC Clemente, LK Ursell, LW Parfrey, R Knight Cell 148 (6), 1258-1270, 2012	3845	2012
A framework for human microbiome research BA Methé, KE Nelson, M Pop, HH Creasy, MG Giglio, C Huttenhower, ... Nature 486 (7402), 215, 2012	2269*	2012
The long-term stability of the human gut microbiota JJ Faith, JL Guruge, M Charbonneau, S Subramanian, H Seedorf, ... Science 341 (6141), 2013	2079	2013
A communal catalogue reveals Earth’s multiscale microbial diversity LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ... Nature 551 (7681), 2017	2033	2017
Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans BD Muegge, J Kuczynski, D Knights, JC Clemente, A González, ... Science 332 (6032), 970-974, 2011	1919	2011
Cohabiting family members share microbiota with one another and with their dogs SJ Song, C Lauber, EK Costello, CA Lozupone, G Humphrey, ... Elife 2, e00458, 2013	1096	2013
The microbiome in early life: implications for health outcomes S Tamburini, N Shen, HC Wu, JC Clemente Nature Medicine 22 (7), 713-722, 2016	1058	2016
Partial restoration of the microbiota of cesarean-born infants via vaginal microbial transfer MG Dominguez-Bello, KM De Jesus-Laboy, N Shen, LM Cox, A Amir, ... Nature medicine 22 (3), 250-253, 2016	1002	2016
The microbiome of uncontacted Amerindians JC Clemente, EC Pehrsson, MJ Blaser, K Sandhu, Z Gao, B Wang, ... Science Advances 1 (3), e1500183, 2015	862	2015
Experimental and analytical tools for studying the human microbiome J Kuczynski, CL Lauber, WA Walters, LW Parfrey, JC Clemente, D Gevers, ... Nature Reviews Genetics 13 (1), 47-58, 2012	815	2012
The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome D McDonald, JC Clemente, J Kuczynski, JR Rideout, J Stombaugh, ... Gigascience 1 (1), 2047-217X-1-7, 2012	758	2012
American Gut: an Open Platform for Citizen Science Microbiome Research D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ... mSystems 3 (3), e00031-18, 2018	607	2018
Intestinal microbiota is influenced by gender and body mass index C Haro, OA Rangel-Zúñiga, JF Alcalá-Díaz, F Gómez-Delgado, ... PloS one 11 (5), e0154090, 2016	601	2016
Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences JR Rideout, Y He, JA Navas-Molina, WA Walters, LK Ursell, SM Gibbons, ... PeerJ 2, e545, 2014	585	2014
Reconstructing the Microbial Diversity and Function of Pre-Agricultural Tallgrass Prairie Soils in the United States N Fierer, J Ladau, JC Clemente, JW Leff, SM Owens, KS Pollard, R Knight, ... Science 342 (6158), 621-624, 2013	532	2013

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