Kang Ning
TitleCited byYear
Saliva microbiomes distinguish caries-active from healthy human populations
F Yang, X Zeng, K Ning, KL Liu, CC Lo, W Wang, J Chen, D Wang, ...
The ISME Journal, 2011
2292011
Choreography of transcriptomes and lipidomes of Nannochloropsis reveals the mechanisms of oil synthesis in microalgae
J Li, D Han, D Wang, K Ning, J Jia, L Wei, X Jing, S Huang, J Chen, Y Li, ...
The Plant Cell 26 (4), 1645-1665, 2014
1982014
Using indirect protein–protein interactions for protein complex prediction
HN Chua, K Ning, WK Sung, HW Leong, L Wong
Journal of Bioinformatics and Computational Biology 6 (03), 435-466, 2008
1712008
Nannochloropsis genomes reveal evolution of microalgal oleaginous traits
D Wang, K Ning, J Li, J Hu, D Han, H Wang, X Zeng, X Jing, Q Zhou, X Su, ...
PLoS genetics 10 (1), e1004094, 2014
1522014
Comparative Analysis of Different Label-Free Mass Spectrometry Based Protein Abundance Estimates and Their Correlation with RNA-Seq Gene Expression Data
K Ning, D Fermin, AI Nesvizhskii
Journal of Proteome Research 11 (4), 2261-2271, 2012
1302012
A pseudo DNA cryptography method
K Ning
arXiv preprint arXiv:0903.2693, 2009
992009
Examination of the relationship between essential genes in PPI network and hub proteins in reverse nearest neighbor topology
K Ning, H Ng, S Srihari, H Leong, A Nesvizhskii
BMC bioinformatics 11 (1), 505, 2010
662010
The utility of mass spectrometry-based proteomic data for validation of novel alternative splice forms reconstructed from RNA-Seq data: a preliminary assessment
K Ning, AI Nesvizhskii
BMC bioinformatics 11 (Suppl 11), S14, 2010
652010
Biological ingredient analysis of traditional Chinese medicine preparation based on high-throughput sequencing: the story for Liuwei Dihuang Wan
X Cheng, X Su, X Chen, H Zhao, C Bo, J Xu, H Bai, K Ning
Scientific reports 4, 5147, 2014
642014
Genomic foundation of starch-to-lipid switch in oleaginous Chlorella spp.
J Fan, K Ning, X Zeng, Y Luo, D Wang, J Hu, J Li, H Xu, J Huang, M Wan, ...
Plant Physiology 169 (4), 2444-2461, 2015
602015
MCL-CAw: a refinement of MCL for detecting yeast complexes from weighted PPI networks by incorporating core-attachment structure
S Srihari, K Ning, HW Leong
BMC bioinformatics 11 (1), 504, 2010
602010
QC-Chain: fast and holistic quality control method for next-generation sequencing data
Q Zhou, X Su, A Wang, J Xu, K Ning
PloS one 8 (4), e60234, 2013
592013
Genome-wide identification of transcription factors and transcription-factor binding sites in oleaginous microalgae Nannochloropsis
J Hu, D Wang, J Li, G Jing, K Ning, J Xu
Scientific reports 4, 5454, 2014
542014
Computational analysis of unassigned high‐quality MS/MS spectra in proteomic data sets
K Ning, D Fermin, AI Nesvizhskii
Proteomics 10 (14), 2712-2718, 2010
512010
Parallel-META 2.0: enhanced metagenomic data analysis with functional annotation, high performance computing and advanced visualization
X Su, W Pan, B Song, J Xu, K Ning
PloS one 9 (3), e89323, 2014
482014
Nannochloropsis plastid and mitochondrial phylogenomes reveal organelle diversification mechanism and intragenus phylotyping strategy in microalgae
L Wei, Y Xin, D Wang, X Jing, Q Zhou, X Su, J Jia, K Ning, F Chen, Q Hu, ...
BMC genomics 14 (1), 534, 2013
482013
Parallel-META: efficient metagenomic data analysis based on high-performance computation
X Su, J Xu, K Ning
BMC Systems Biology 6 (Suppl 1), S16, 2012
402012
Meta-Storms: Efficient Search for Similar Microbial Communities Based on a Novel Indexing Scheme and Similarity Score for Metagenomic Data
X Su, J Xu, K Ning
Bioinformatics, 2012
372012
A Culture-Independent Approach to Unravel Uncultured Bacteria and Functional Genes in a Complex Microbial Community
Y Wang, Y Chen, Q Zhou, S Huang, K Ning, J Xu, RM Kalin, S Rolfe, ...
PloS one 7 (10), e47530, 2012
312012
Parallel-META 3: Comprehensive taxonomical and functional analysis platform for efficient comparison of microbial communities
G Jing, Z Sun, H Wang, Y Gong, S Huang, K Ning, J Xu, X Su
Scientific reports 7, 40371, 2017
282017
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Articles 1–20