| An integrated encyclopedia of DNA elements in the human genome ENCODE Project Consortium Nature 489 (7414), 57, 2012 | 16545* | 2012 |
| A user's guide to the encyclopedia of DNA elements (ENCODE) ENCODE Project Consortium PLoS biology 9 (4), e1001046, 2011 | 1442 | 2011 |
| Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors J Wang, J Zhuang, S Iyer, XY Lin, TW Whitfield, MC Greven, BG Pierce, ... Genome research 22 (9), 1798-1812, 2012 | 1046 | 2012 |
| Simulating monovalent and divalent ions in aqueous solution using a Drude polarizable force field H Yu, TW Whitfield, E Harder, G Lamoureux, I Vorobyov, VM Anisimov, ... Journal of chemical theory and computation 6 (3), 774-786, 2010 | 467 | 2010 |
| Functional analysis of transcription factor binding sites in human promoters TW Whitfield, J Wang, PJ Collins, EC Partridge, SF Aldred, ND Trinklein, ... Genome biology 13 (9), R50, 2012 | 201 | 2012 |
| Understanding the dielectric properties of liquid amides from a polarizable force field E Harder, VM Anisimov, TW Whitfield, AD MacKerell Jr, B Roux The Journal of Physical Chemistry B 112 (11), 3509-3521, 2008 | 148 | 2008 |
| Genomic occupancy of Runx2 with global expression profiling identifies a novel dimension to control of osteoblastogenesis H Wu, TW Whitfield, JAR Gordon, JR Dobson, PWL Tai, AJ van Wijnen, ... Genome biology 15, 1-17, 2014 | 145 | 2014 |
| Theoretical Study of Aqueous Solvation of K+ Comparing ab Initio, Polarizable, and Fixed-Charge Models TW Whitfield, S Varma, E Harder, G Lamoureux, SB Rempe, B Roux Journal of Chemical Theory and Computation 3 (6), 2068-2082, 2007 | 108 | 2007 |
| Demethylated HSATII DNA and HSATII RNA foci sequester PRC1 and MeCP2 into cancer-specific nuclear bodies LL Hall, M Byron, DM Carone, TW Whitfield, GP Pouliot, A Fischer, ... Cell reports 18 (12), 2943-2956, 2017 | 100 | 2017 |
| Identification of functional modules that correlate with phenotypic difference: the influence of network topology JH Hung, TW Whitfield, TH Yang, Z Hu, Z Weng, C DeLisi Genome biology 11, 1-16, 2010 | 90 | 2010 |
| Quantum Drude oscillator model of atoms and molecules: Many-body polarization and dispersion interactions for atomistic simulation AP Jones, J Crain, VP Sokhan, TW Whitfield, GJ Martyna Physical Review B 87 (14), 144103, 2013 | 81 | 2013 |
| Genome-wide studies reveal that H3K4me3 modification in bivalent genes is dynamically regulated during the pluripotent cell cycle and stabilized upon differentiation RA Grandy, TW Whitfield, H Wu, MP Fitzgerald, JJ VanOudenhove, ... Molecular and cellular biology 36 (4), 615-627, 2016 | 70 | 2016 |
| Structure and Hydrogen Bonding in Neat N-Methylacetamide: Classical Molecular Dynamics and Raman Spectroscopy Studies of a Liquid of Peptidic Fragments TW Whitfield, GJ Martyna, S Allison, SP Bates, H Vass, J Crain The Journal of Physical Chemistry B 110 (8), 3624-3637, 2006 | 70 | 2006 |
| Generalized parallel sampling TW Whitfield, L Bu, JE Straub Physica A: Statistical Mechanics and its Applications 305 (1-2), 157-171, 2002 | 63 | 2002 |
| Chromatin dynamics regulate mesenchymal stem cell lineage specification and differentiation to osteogenesis H Wu, JAR Gordon, TW Whitfield, PWL Tai, AJ van Wijnen, JL Stein, ... Biochimica et Biophysica Acta (BBA)-Gene Regulatory Mechanisms 1860 (4), 438-449, 2017 | 62 | 2017 |
| A combined experimental and theoretical study of ion solvation in liquid N-methylacetamide H Yu, CL Mazzanti, TW Whitfield, RE Koeppe, OS Anderson, B Roux Journal of the American Chemical Society 132 (31), 10847, 2010 | 47 | 2010 |
| Genome-wide co-occupancy of AML1-ETO and N-CoR defines the t (8; 21) AML signature in leukemic cells DJ Trombly, TW Whitfield, S Padmanabhan, JAR Gordon, JB Lian, ... BMC genomics 16, 1-13, 2015 | 39 | 2015 |
| Liquid NMA: A surprisingly realistic model for hydrogen bonding motifs in proteins TW Whitfield, GJ Martyna, S Allison, SP Bates, J Crain Chemical physics letters 414 (1-3), 210-214, 2005 | 35 | 2005 |
| A unified formalism for many-body polarization and dispersion: The quantum Drude model applied to fluid xenon TW Whitfield, GJ Martyna Chemical physics letters 424 (4-6), 409-413, 2006 | 33 | 2006 |
| Epigenetic landscape during osteoblastogenesis defines a differentiation-dependent Runx2 promoter region PWL Tai, H Wu, JAR Gordon, TW Whitfield, AR Barutcu, AJ Van Wijnen, ... Gene 550 (1), 1-9, 2014 | 32 | 2014 |
Zhiping WengProf & Chair, Department of Genomics and Computational Biology, UMASS Medical SchoolVerified email at umassmed.edu
