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D. Peter Tieleman
D. Peter Tieleman
Canada Research Chair in Molecular Simulation, University of Calgary
Verified email at ucalgary.ca - Homepage
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Cited by
Cited by
Year
The MARTINI force field: coarse grained model for biomolecular simulations
SJ Marrink, HJ Risselada, S Yefimov, DP Tieleman, AH De Vries
The journal of physical chemistry B 111 (27), 7812-7824, 2007
58292007
The MARTINI coarse-grained force field: extension to proteins
L Monticelli, SK Kandasamy, X Periole, RG Larson, DP Tieleman, ...
Journal of chemical theory and computation 4 (5), 819-834, 2008
26972008
Improved parameters for the martini coarse-grained protein force field
DH De Jong, G Singh, WFD Bennett, C Arnarez, TA Wassenaar, ...
Journal of chemical theory and computation 9 (1), 687-697, 2013
13602013
Perspective on the Martini model
SJ Marrink, DP Tieleman
Chemical Society Reviews 42 (16), 6801-6822, 2013
12362013
GROMACS user manual version 3.2
D van der Spoel, E Lindahl, B Hess, AR van Buuren, E Apol, ...
Nijenborgh 4, 9747, 2004
1053*2004
A computer perspective of membranes: molecular dynamics studies of lipid bilayer systems
DP Tieleman, SJ Marrink, HJC Berendsen
Biochimica et Biophysica Acta (BBA)-Reviews on Biomembranes 1331 (3), 235-270, 1997
10131997
Computational Lipidomics with insane: A Versatile Tool for Generating Custom Membranes for Molecular Simulations
TA Wassenaar, HI Ingˇlfsson, RA Bockmann, DP Tieleman, SJ Marrink
Journal of chemical theory and computation 11 (5), 2144-2155, 2015
9812015
Lipid organization of the plasma membrane
HI Ingˇlfsson, MN Melo, FJ Van Eerden, C Arnarez, CA Lopez, ...
Journal of the american chemical society 136 (41), 14554-14559, 2014
8802014
Martini 3: a general purpose force field for coarse-grained molecular dynamics
PCT Souza, R Alessandri, J Barnoud, S Thallmair, I Faustino, ...
Nature methods 18 (4), 382-388, 2021
6882021
Effect of lipid peroxidation on the properties of lipid bilayers: a molecular dynamics study
J Wong-Ekkabut, Z Xu, W Triampo, I Tang, D Peter Tieleman, L Monticelli
Biophysical journal 93 (12), 4225-4236, 2007
6882007
Going backward: a flexible geometric approach to reverse transformation from coarse grained to atomistic models
TA Wassenaar, K Pluhackova, RA Bockmann, SJ Marrink, DP Tieleman
Journal of chemical theory and computation 10 (2), 676-690, 2014
6652014
Computer simulation study of fullerene translocation through lipid membranes
J Wong-Ekkabut, S Baoukina, W Triampo, IM Tang, DP Tieleman, ...
Nature nanotechnology 3 (6), 363-368, 2008
5922008
Molecular dynamics simulations of a fully hydrated dipalmitoylphosphatidylcholine bilayer with different macroscopic boundary conditions and parameters
DP Tieleman, HJC Berendsen
The Journal of chemical physics 105 (11), 4871-4880, 1996
5921996
Computational modeling of realistic cell membranes
SJ Marrink, V Corradi, PCT Souza, HI Ingolfsson, DP Tieleman, ...
Chemical reviews 119 (9), 6184-6226, 2019
5902019
Distribution of amino acids in a lipid bilayer from computer simulations
JL MacCallum, WFD Bennett, DP Tieleman
Biophysical journal 94 (9), 3393-3404, 2008
5902008
Simulation of pore formation in lipid bilayers by mechanical stress and electric fields
DP Tieleman, H Leontiadou, AE Mark, SJ Marrink
Journal of the American Chemical Society 125 (21), 6382-6383, 2003
5462003
Setting up and running molecular dynamics simulations of membrane proteins
C Kandt, WL Ash, D Peter Tieleman
Methods 41 (4), 475-488, 2007
5142007
The molecular basis of electroporation
DP Tieleman
BMC biochemistry 5, 1-12, 2004
5112004
Lipids on the move: simulations of membrane pores, domains, stalks and curves
SJ Marrink, AH De Vries, DP Tieleman
Biochimica et Biophysica Acta (BBA)-Biomembranes 1788 (1), 149-168, 2009
5002009
A molecular dynamics study of the pores formed by Escherichia coli OmpF porin in a fully hydrated palmitoyloleoylphosphatidylcholine bilayer
DP Tieleman, HJC Berendsen
Biophysical journal 74 (6), 2786-2801, 1998
4321998
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