Ryan Dale
Ryan Dale
National Institute of Child Health and Human Development, National Institutes of Health
Verified email at
Cited by
Cited by
A compendium of RNA-binding motifs for decoding gene regulation
D Ray, H Kazan, KB Cook, MT Weirauch, HS Najafabadi, X Li, ...
Nature 499 (7457), 172-177, 2013
Bioconda: sustainable and comprehensive software distribution for the life sciences.
B Grüning, R Dale, A Sjödin, BA Chapman, J Rowe, CH Tomkins-Tinch, ...
Nature methods 15 (7), 475, 2018
Pybedtools: a flexible Python library for manipulating genomic datasets and annotations
RK Dale, BS Pedersen, AR Quinlan
Bioinformatics 27 (24), 3423-3424, 2011
Cell type specificity of chromatin organization mediated by CTCF and cohesin
C Hou, R Dale, A Dean
Proceedings of the National Academy of Sciences 107 (8), 3651-3656, 2010
Practical computational reproducibility in the life sciences
B Grüning, J Chilton, J Köster, R Dale, N Soranzo, M van den Beek, ...
Cell systems 6 (6), 631-635, 2018
Sex- and Tissue-Specific Functions of Drosophila Doublesex Transcription Factor Target Genes
E Clough, E Jimenez, YA Kim, C Whitworth, MC Neville, LU Hempel, ...
Developmental cell 31 (6), 761-773, 2014
RNAi-independent role for Argonaute2 in CTCF/CP190 chromatin insulator function
N Moshkovich, P Nisha, PJ Boyle, BA Thompson, RK Dale, EP Lei
Genes & development 25 (16), 1686-1701, 2011
Role of LDB1 in the transition from chromatin looping to transcription activation
I Krivega, RK Dale, A Dean
Genes & development 28 (12), 1278-1290, 2014
Mediation of Drosophilaautosomal dosage effects and compensation by network interactions
JH Malone, DY Cho, NR Mattiuzzo, CG Artieri, L Jiang, RK Dale, ...
Genome biology 13, 1-17, 2012
Ldb1-nucleated transcription complexes function as primary mediators of global erythroid gene activation
LQ Li, J Freudenberg, K Cui, R Dale, SH Song, A Dean, K Zhao, R Jothi, ...
Blood 121 (22), 4575-4585, 2013
Regulatory roles of Escherichia coli 5'UTR and ORF-internal RNAs detected by 3'end mapping
PP Adams, G Baniulyte, C Esnault, K Chegireddy, N Singh, M Monge, ...
Elife 10, e62438, 2021
The LDB1 complex co-opts CTCF for erythroid lineage-specific long-range enhancer interactions
J Lee, I Krivega, RK Dale, A Dean
Cell reports 19 (12), 2490-2502, 2017
Spatial and temporal patterns of salinity and temperature at an intertidal groundwater seep
RK Dale, DC Miller
Estuarine, Coastal and Shelf Science 72 (1-2), 283-298, 2007
CTCF-mediated transcriptional regulation through cell type-specific chromosome organization in the β-globin locus
I Junier, RK Dale, C Hou, F Képčs, A Dean
Nucleic acids research 40 (16), 7718-7727, 2012
Tissue-specific regulation of chromatin insulator function
LH Matzat, RK Dale, N Moshkovich, EP Lei
PLoS genetics 8 (11), e1003069, 2012
Genome-wide localization of exosome components to active promoters and chromatin insulators in Drosophila
SJ Lim, PJ Boyle, M Chinen, RK Dale, EP Lei
Nucleic acids research 41 (5), 2963-2980, 2013
Distinct Ldb1/NLI complexes orchestrate γ-globin repression and reactivation through ETO2 in human adult erythroid cells
CM Kiefer, J Lee, C Hou, RK Dale, YT Lee, ER Meier, JL Miller, A Dean
Blood 118 (23), 6200-6208, 2011
Enhancer–promoter interactions can bypass CTCF-mediated boundaries and contribute to phenotypic robustness
S Chakraborty, N Kopitchinski, Z Zuo, A Eraso, P Awasthi, R Chari, A Mitra, ...
Nature Genetics 55 (2), 280-290, 2023
Somatic SMAD3-activating mutations cause melorheostosis by up-regulating the TGF-β/SMAD pathway
H Kang, S Jha, A Ivovic, N Fratzl-Zelman, Z Deng, A Mitra, WA Cabral, ...
Journal of Experimental Medicine 217 (5), 2020
The RNA-binding protein Rumpelstiltskin antagonizes gypsy chromatin insulator function in a tissue-specific manner
MR King, LH Matzat, RK Dale, SJ Lim, EP Lei
Journal of cell science 127 (13), 2956-2966, 2014
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