Follow
Thomas Derrien
Thomas Derrien
IGDR - CNRS- Univ Rennes1
Verified email at univ-rennes1.fr - Homepage
Title
Cited by
Cited by
Year
An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57, 2012
138582012
Landscape of transcription in human cells
S Djebali, CA Davis, A Merkel, A Dobin, T Lassmann, A Mortazavi, ...
Nature 489 (7414), 101-108, 2012
54862012
The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression
T Derrien, R Johnson, G Bussotti, A Tanzer, S Djebali, H Tilgner, ...
Genome research 22 (9), 1775-1789, 2012
52802012
GENCODE: the reference human genome annotation for The ENCODE Project
J Harrow, A Frankish, JM Gonzalez, E Tapanari, M Diekhans, ...
Genome research 22 (9), 1760-1774, 2012
51822012
Long noncoding RNAs with enhancer-like function in human cells
UA Ørom, T Derrien, M Beringer, K Gumireddy, A Gardini, G Bussotti, ...
Cell 143 (1), 46-58, 2010
19642010
Assessment of transcript reconstruction methods for RNA-seq
T Steijger, JF Abril, PG Engström, F Kokocinski, TJ Hubbard, R Guigó, ...
Nature methods 10 (12), 1177-1184, 2013
7652013
Fast computation and applications of genome mappability
T Derrien, J Estellé, S Marco Sola, DG Knowles, E Raineri, R Guigó, ...
PloS one 7 (1), e30377, 2012
5652012
Identification of genomic regions associated with phenotypic variation between dog breeds using selection mapping
A Vaysse, A Ratnakumar, T Derrien, E Axelsson, G Rosengren Pielberg, ...
PLoS genetics 7 (10), e1002316, 2011
4072011
FEELnc: a tool for long non-coding RNA annotation and its application to the dog transcriptome
V Wucher, F Legeai, B Hédan, G Rizk, L Lagoutte, T Leeb, V Jagannathan, ...
Nucleic acids research 45 (8), e57-e57, 2017
3682017
Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species
TC Mathers, Y Chen, G Kaithakottil, F Legeai, ST Mugford, ...
Genome biology 18, 1-20, 2017
2032017
The long non-coding RNAs: a new (p) layer in the “dark matter”
T Derrien, R Guigó, R Johnson
Frontiers in genetics 2, 107, 2012
1472012
GENCODE: the reference human genome annotation for The ENCODE Project. vol. 22
J Harrow, A Frankish, JM Gonzalez, E Tapanari, M Diekhans, ...
Genome Res, 1760-1774, 2012
1332012
Multi-species annotation of transcriptome and chromatin structure in domesticated animals
S Foissac, S Djebali, K Munyard, N Vialaneix, A Rau, K Muret, D Esquerré, ...
BMC biology 17, 1-25, 2019
1052019
Transcriptome profiling of mouse samples using nanopore sequencing of cDNA and RNA molecules
C Sessegolo, C Cruaud, C Da Silva, A Cologne, M Dubarry, T Derrien, ...
Scientific reports 9 (1), 14908, 2019
992019
Third Report on Chicken Genes and Chromosomes 2015Prepared by
M Schmid, J Smith, DW Burt, BL Aken, PB Antin, AL Archibald, C Ashwell, ...
Cytogenetic and genome research 145 (2), 78-179, 2015
942015
The origins, evolution, and functional potential of alternative splicing in vertebrates
JM Mudge, A Frankish, J Fernandez-Banet, T Alioto, T Derrien, C Howald, ...
Molecular biology and evolution 28 (10), 2949-2959, 2011
912011
Facilitating genome navigation: survey sequencing and dense radiation-hybrid gene mapping
C Hitte, J Madeoy, EF Kirkness, C Priat, TD Lorentzen, F Senger, ...
Nature Reviews Genetics 6 (8), 643-648, 2005
882005
Re‐annotation, improved large‐scale assembly and establishment of a catalogue of noncoding loci for the genome of the model brown alga Ectocarpus
A Cormier, K Avia, L Sterck, T Derrien, V Wucher, G Andres, M Monsoor, ...
New Phytologist 214 (1), 219-232, 2017
732017
AutoGRAPH: an interactive web server for automating and visualizing comparative genome maps
T Derrien, C André, F Galibert, C Hitte
Bioinformatics 23 (4), 498-499, 2007
732007
Long noncoding RNA repertoire in chicken liver and adipose tissue
K Muret, C Klopp, V Wucher, D Esquerré, F Legeai, F Lecerf, C Désert, ...
Genetics Selection Evolution 49, 1-17, 2017
722017
The system can't perform the operation now. Try again later.
Articles 1–20