Jinbo Xu
Cited by
Cited by
Template-based protein structure modeling using the RaptorX web server
M Källberg, H Wang, S Wang, J Peng, Z Wang, H Lu, J Xu
Nature protocols 7 (8), 1511-1522, 2012
Global alignment of multiple protein interaction networks with application to functional orthology detection
R Singh, J Xu, B Berger
Proceedings of the National Academy of Sciences 105 (35), 12763-12768, 2008
Opportunities And Obstacles For Deep Learning In Biology And Medicine
T Ching, DS Himmelstein, BK Beaulieu-Jones, AA Kalinin, BT Do, ...
J R Soc Interface 15 (141), 2018
Accurate De Novo Prediction of Protein Contact Map by Ultra-Deep Learning Model
S Wang, S Sun, Z Li, R Zhang, J Xu
PLOS Computational Biology 13 (1), e1005324, 2017
Pairwise global alignment of protein interaction networks by matching neighborhood topology
R Singh, J Xu, B Berger
Annual International Conference on Research in Computational Molecular …, 2007
RAPTOR: optimal protein threading by linear programming
J Xu, M Li, D Kim, Y Xu
Journal of Bioinformatics and Computational Biology 1 (01), 95-117, 2003
RaptorX: exploiting structure information for protein alignment by statistical inference
J Peng, J Xu
Proteins: Structure, Function, and Bioinformatics 79 (S10), 161-171, 2011
Protein secondary structure prediction using deep convolutional neural fields
S Wang, J Peng, J Ma, J Xu
Scientific reports 6, 2016
Identification of let-7–regulated oncofetal genes
B Boyerinas, SM Park, N Shomron, MM Hedegaard, J Vinther, ...
Cancer research 68 (8), 2587, 2008
Conditional neural fields
J Peng, L Bo, J Xu
Advances in neural information processing systems, 1419-1427, 2009
RaptorX-Property: a web server for protein structure property prediction
S Wang, W Li, S Liu, J Xu
Nucleic acids research 44 (W1), W430-W435, 2016
RaptorX server: a resource for template-based protein structure modeling
M Källberg, G Margaryan, S Wang, J Ma, J Xu
Protein Structure Prediction, 17-27, 2014
Protein structure alignment beyond spatial proximity
S Wang, J Ma, J Peng, J Xu
Scientific reports 3, 1448, 2013
A multiple‐template approach to protein threading
J Peng, J Xu
Proteins: Structure, Function, and Bioinformatics 79 (6), 1930-1939, 2011
Protein threading using context-specific alignment potential
J Ma, S Wang, F Zhao, J Xu
Bioinformatics 29 (13), i257-i265, 2013
Rapid protein side-chain packing via tree decomposition
J Xu
Research in computational molecular biology, 423-439, 2005
Predicting protein contact map using evolutionary and physical constraints by integer programming
Z Wang, J Xu
Bioinformatics 29 (13), i266-i273, 2013
Low-homology protein threading
J Peng, J Xu
Bioinformatics 26 (12), i294-i300, 2010
Struct2Net: a web service to predict protein–protein interactions using a structure-based approach
R Singh, D Park, J Xu, R Hosur, B Berger
Nucleic acids research 38 (suppl_2), W508-W515, 2010
Protein 8‐class secondary structure prediction using conditional neural fields
Z Wang, F Zhao, J Peng, J Xu
Proteomics 11 (19), 3786-3792, 2011
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