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Michael A. Skinnider
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PRISM 3: expanded prediction of natural product chemical structures from microbial genomes
MA Skinnider, NJ Merwin, CW Johnston, NA Magarvey
Nucleic acids research 45 (W1), W49-W54, 2017
2802017
Genomes to natural products Prediction informatics for secondary metabolomes (PRISM)
MA Skinnider, CA Dejong, PN Rees, CW Johnston, H Li, ALH Webster, ...
Nucleic acids research 43 (20), 9645-9662, 2015
2742015
Confronting false discoveries in single-cell differential expression
JW Squair, M Gautier, C Kathe, MA Anderson, ND James, TH Hutson, ...
Nature Communications 12, 5692, 2021
2012021
Genomic charting of ribosomally synthesized natural product chemical space facilitates targeted mining
MA Skinnider*, CW Johnston*, RE Edgar, CA Dejong, NJ Merwin, ...
Proceedings of the National Academy of Sciences 113 (42), E6343-E6351, 2016
1512016
Polyketide and nonribosomal peptide retro-biosynthesis and global gene cluster matching
CA Dejong*, GM Chen*, H Li*, CW Johnston, MR Edwards, PN Rees, ...
Nature chemical biology 12 (12), 1007-1014, 2016
1402016
Comprehensive prediction of secondary metabolite structure and biological activity from microbial genome sequences
MA Skinnider, CW Johnston, M Gunabalasingam, NJ Merwin, ...
Nature Communications 11 (1), 1-9, 2020
1362020
An automated Genomes-to-Natural Products platform (GNP) for the discovery of modular natural products
CW Johnston*, MA Skinnider*, MA Wyatt, X Li, MRM Ranieri, L Yang, ...
Nature communications 6, 8421, 2015
1262015
Assembly and clustering of natural antibiotics guides target identification
CW Johnston, MA Skinnider, CA Dejong, PN Rees, GM Chen, CG Walker, ...
Nature chemical biology 12 (4), 233-239, 2016
982016
Evaluating measures of association for single-cell transcriptomics
MA Skinnider, JW Squair, LJ Foster
Nature methods 16 (5), 381-386, 2019
882019
DeepRiPP integrates multiomics data to automate discovery of novel ribosomally synthesized natural products
NJ Merwin*, WK Mousa*, CA Dejong, MA Skinnider, MJ Cannon, H Li, ...
Proceedings of the National Academy of Sciences 117 (1), 371-380, 2020
772020
Cell type prioritization in single-cell data
MA Skinnider*, JW Squair*, C Kathe, MA Anderson, M Gautier, ...
Nature Biotechnology 39 (1), 30-34, 2021
682021
An atlas of protein-protein interactions across mouse tissues
MA Skinnider*, NE Scott*, A Prudova, CH Kerr, N Stoynov, RG Stacey, ...
Cell, 2021
57*2021
A rapid and accurate approach for prediction of interactomes from co-elution data (PrInCE)
RG Stacey, MA Skinnider, NE Scott, LJ Foster
BMC Bioinformatics 18 (1), 457, 2017
512017
Chemical language models enable navigation in sparsely populated chemical space
MA Skinnider, RG Stacey, DS Wishart, LJ Foster
Nature Machine Intelligence 3 (9), 759-770, 2021
432021
Comparative analysis of chemical similarity methods for modular natural products with a hypothetical structure enumeration algorithm
MA Skinnider, CA Dejong, BC Franczak, PD McNicholas, NA Magarvey
Journal of Cheminformatics 9 (1), 46, 2017
352017
Genomic data integration systematically biases interactome mapping
MA Skinnider, RG Stacey, LJ Foster
PLoS computational biology 14 (10), e1006474, 2018
322018
Global analysis of prokaryotic tRNA-derived cyclodipeptide biosynthesis
MA Skinnider, CW Johnston, NJ Merwin, CA Dejong, NA Magarvey
BMC Genomics 19 (1), 45, 2018
312018
A Targeted Proteomics Analysis of Cerebrospinal Fluid after Acute Human Spinal Cord Injury
F Streijger, MA Skinnider, JC Rogalski, R Balshaw, CP Shannon, ...
Journal of Neurotrauma 34 (12), 2054-2068, 2017
302017
Meta-analysis defines principles for the design and analysis of co-fractionation mass spectrometry experiments
MA Skinnider, LJ Foster
Nature Methods 18 (7), 806-815, 2021
262021
Dynamic rewiring of the human interactome by interferon signaling
CH Kerr*, MA Skinnider*, DDT Andrews, AM Madero, QWT Chan, ...
Genome Biology 21 (1), 1-36, 2020
262020
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Articles 1–20