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Michael A. Skinnider
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Confronting false discoveries in single-cell differential expression
JW Squair, M Gautier, C Kathe, MA Anderson, ND James, TH Hutson, ...
Nature Communications 12, 5692, 2021
4252021
PRISM 3: expanded prediction of natural product chemical structures from microbial genomes
MA Skinnider, NJ Merwin, CW Johnston, NA Magarvey
Nucleic acids research 45 (W1), W49-W54, 2017
3372017
Genomes to natural products Prediction informatics for secondary metabolomes (PRISM)
MA Skinnider, CA Dejong, PN Rees, CW Johnston, H Li, ALH Webster, ...
Nucleic acids research 43 (20), 9645-9662, 2015
3102015
Comprehensive prediction of secondary metabolite structure and biological activity from microbial genome sequences
MA Skinnider, CW Johnston, M Gunabalasingam, NJ Merwin, ...
Nature Communications 11 (1), 1-9, 2020
2182020
Genomic charting of ribosomally synthesized natural product chemical space facilitates targeted mining
MA Skinnider*, CW Johnston*, RE Edgar, CA Dejong, NJ Merwin, ...
Proceedings of the National Academy of Sciences 113 (42), E6343-E6351, 2016
1642016
Polyketide and nonribosomal peptide retro-biosynthesis and global gene cluster matching
CA Dejong*, GM Chen*, H Li*, CW Johnston, MR Edwards, PN Rees, ...
Nature chemical biology 12 (12), 1007-1014, 2016
1502016
An automated Genomes-to-Natural Products platform (GNP) for the discovery of modular natural products
CW Johnston*, MA Skinnider*, MA Wyatt, X Li, MRM Ranieri, L Yang, ...
Nature communications 6, 8421, 2015
1352015
Cell type prioritization in single-cell data
MA Skinnider*, JW Squair*, C Kathe, MA Anderson, M Gautier, ...
Nature Biotechnology 39 (1), 30-34, 2021
1192021
The neurons that restore walking after paralysis
C Kathe*, MA Skinnider*, TH Hutson*, N Regazzi, M Gautier, ...
Nature 611 (7936), 540-547, 2022
1172022
Evaluating measures of association for single-cell transcriptomics
MA Skinnider, JW Squair, LJ Foster
Nature methods 16 (5), 381-386, 2019
1172019
Assembly and clustering of natural antibiotics guides target identification
CW Johnston, MA Skinnider, CA Dejong, PN Rees, GM Chen, CG Walker, ...
Nature chemical biology 12 (4), 233-239, 2016
1082016
DeepRiPP integrates multiomics data to automate discovery of novel ribosomally synthesized natural products
NJ Merwin*, WK Mousa*, CA Dejong, MA Skinnider, MJ Cannon, H Li, ...
Proceedings of the National Academy of Sciences 117 (1), 371-380, 2020
1062020
An atlas of protein-protein interactions across mouse tissues
MA Skinnider*, NE Scott*, A Prudova, CH Kerr, N Stoynov, RG Stacey, ...
Cell 184, 4073-4089, 2021
822021
Chemical language models enable navigation in sparsely populated chemical space
MA Skinnider, RG Stacey, DS Wishart, LJ Foster
Nature Machine Intelligence 3 (9), 759-770, 2021
782021
A rapid and accurate approach for prediction of interactomes from co-elution data (PrInCE)
RG Stacey, MA Skinnider, NE Scott, LJ Foster
BMC Bioinformatics 18 (1), 457, 2017
612017
Artificial intelligence for natural product drug discovery
MW Mullowney, KR Duncan, SS Elsayed, N Garg, JJJ van der Hooft, ...
Nature Reviews Drug Discovery 22 (11), 895-916, 2023
592023
Comparative analysis of chemical similarity methods for modular natural products with a hypothetical structure enumeration algorithm
MA Skinnider, CA Dejong, BC Franczak, PD McNicholas, NA Magarvey
Journal of Cheminformatics 9 (1), 46, 2017
462017
A deep generative model enables automated structure elucidation of novel psychoactive substances
MA Skinnider, F Wang, D Pasin, R Greiner, LJ Foster, PW Dalsgaard, ...
Nature Machine Intelligence 3, 973-984, 2021
432021
Meta-analysis defines principles for the design and analysis of co-fractionation mass spectrometry experiments
MA Skinnider, LJ Foster
Nature Methods 18 (7), 806-815, 2021
402021
Genomic data integration systematically biases interactome mapping
MA Skinnider, RG Stacey, LJ Foster
PLoS computational biology 14 (10), e1006474, 2018
352018
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Articles 1–20