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Michael A. Skinnider
Michael A. Skinnider
Verified email at princeton.edu - Homepage
Title
Cited by
Cited by
Year
Confronting false discoveries in single-cell differential expression
JW Squair, M Gautier, C Kathe, MA Anderson, ND James, TH Hutson, ...
Nature Communications 12, 5692, 2021
6092021
PRISM 3: expanded prediction of natural product chemical structures from microbial genomes
MA Skinnider, NJ Merwin, CW Johnston, NA Magarvey
Nucleic acids research 45 (W1), W49-W54, 2017
3612017
Genomes to natural products Prediction informatics for secondary metabolomes (PRISM)
MA Skinnider, CA Dejong, PN Rees, CW Johnston, H Li, ALH Webster, ...
Nucleic acids research 43 (20), 9645-9662, 2015
3352015
Comprehensive prediction of secondary metabolite structure and biological activity from microbial genome sequences
MA Skinnider, CW Johnston, M Gunabalasingam, NJ Merwin, ...
Nature Communications 11 (1), 1-9, 2020
2902020
The neurons that restore walking after paralysis
C Kathe*, MA Skinnider*, TH Hutson*, N Regazzi, M Gautier, ...
Nature 611 (7936), 540-547, 2022
1902022
Genomic charting of ribosomally synthesized natural product chemical space facilitates targeted mining
MA Skinnider*, CW Johnston*, RE Edgar, CA Dejong, NJ Merwin, ...
Proceedings of the National Academy of Sciences 113 (42), E6343-E6351, 2016
1792016
Polyketide and nonribosomal peptide retro-biosynthesis and global gene cluster matching
CA Dejong*, GM Chen*, H Li*, CW Johnston, MR Edwards, PN Rees, ...
Nature chemical biology 12 (12), 1007-1014, 2016
1582016
Cell type prioritization in single-cell data
MA Skinnider*, JW Squair*, C Kathe, MA Anderson, M Gautier, ...
Nature Biotechnology 39 (1), 30-34, 2021
1542021
An automated Genomes-to-Natural Products platform (GNP) for the discovery of modular natural products
CW Johnston*, MA Skinnider*, MA Wyatt, X Li, MRM Ranieri, L Yang, ...
Nature communications 6, 8421, 2015
1492015
Artificial intelligence for natural product drug discovery
MW Mullowney, KR Duncan, SS Elsayed, N Garg, JJJ van der Hooft, ...
Nature Reviews Drug Discovery 22 (11), 895-916, 2023
1482023
DeepRiPP integrates multiomics data to automate discovery of novel ribosomally synthesized natural products
NJ Merwin*, WK Mousa*, CA Dejong, MA Skinnider, MJ Cannon, H Li, ...
Proceedings of the National Academy of Sciences 117 (1), 371-380, 2020
1332020
Evaluating measures of association for single-cell transcriptomics
MA Skinnider, JW Squair, LJ Foster
Nature methods 16 (5), 381-386, 2019
1332019
Chemical language models enable navigation in sparsely populated chemical space
MA Skinnider, RG Stacey, DS Wishart, LJ Foster
Nature Machine Intelligence 3 (9), 759-770, 2021
1202021
Assembly and clustering of natural antibiotics guides target identification
CW Johnston, MA Skinnider, CA Dejong, PN Rees, GM Chen, CG Walker, ...
Nature chemical biology 12 (4), 233-239, 2016
1132016
An atlas of protein-protein interactions across mouse tissues
MA Skinnider*, NE Scott*, A Prudova, CH Kerr, N Stoynov, RG Stacey, ...
Cell 184, 4073-4089, 2021
1022021
A rapid and accurate approach for prediction of interactomes from co-elution data (PrInCE)
RG Stacey, MA Skinnider, NE Scott, LJ Foster
BMC Bioinformatics 18 (1), 457, 2017
662017
Recovery of walking after paralysis by regenerating characterized neurons to their natural target region
JW Squair*, M Milano*, A de Coucy, M Gautier, MA Skinnider, ND James, ...
Science 381 (6664), 1338-1345, 2023
622023
A deep generative model enables automated structure elucidation of novel psychoactive substances
MA Skinnider, F Wang, D Pasin, R Greiner, LJ Foster, PW Dalsgaard, ...
Nature Machine Intelligence 3, 973-984, 2021
612021
Meta-analysis defines principles for the design and analysis of co-fractionation mass spectrometry experiments
MA Skinnider, LJ Foster
Nature Methods 18 (7), 806-815, 2021
512021
Comparative analysis of chemical similarity methods for modular natural products with a hypothetical structure enumeration algorithm
MA Skinnider, CA Dejong, BC Franczak, PD McNicholas, NA Magarvey
Journal of Cheminformatics 9 (1), 46, 2017
512017
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