Michael A. Skinnider
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Genomes to natural products Prediction informatics for secondary metabolomes (PRISM)
MA Skinnider, CA Dejong, PN Rees, CW Johnston, H Li, ALH Webster, ...
Nucleic acids research 43 (20), 9645-9662, 2015
PRISM 3: expanded prediction of natural product chemical structures from microbial genomes
MA Skinnider, NJ Merwin, CW Johnston, NA Magarvey
Nucleic acids research 45 (W1), W49-W54, 2017
Genomic charting of ribosomally synthesized natural product chemical space facilitates targeted mining
MA Skinnider, CW Johnston, RE Edgar, CA Dejong, NJ Merwin, PN Rees, ...
Proceedings of the National Academy of Sciences 113 (42), E6343-E6351, 2016
Polyketide and nonribosomal peptide retro-biosynthesis and global gene cluster matching
CA Dejong, GM Chen, H Li, CW Johnston, MR Edwards, PN Rees, ...
Nature chemical biology 12 (12), 1007-1014, 2016
An automated Genomes-to-Natural Products platform (GNP) for the discovery of modular natural products
CW Johnston, MA Skinnider, MA Wyatt, X Li, MRM Ranieri, L Yang, ...
Nature communications 6, 8421, 2015
Assembly and clustering of natural antibiotics guides target identification
CW Johnston, MA Skinnider, CA Dejong, PN Rees, GM Chen, CG Walker, ...
Nature chemical biology 12 (4), 233-239, 2016
Evaluating measures of association for single-cell transcriptomics
MA Skinnider, JW Squair, LJ Foster
Nature methods 16 (5), 381-386, 2019
A rapid and accurate approach for prediction of interactomes from co-elution data (PrInCE)
RG Stacey, MA Skinnider, NE Scott, LJ Foster
BMC Bioinformatics 18 (1), 457, 2017
The Canadian clinician-scientist training program must be reinstated
DDW Twa, JW Squair, MA Skinnider, JX Ji
The Journal of clinical investigation 125 (12), 4317-4319, 2015
Genomic data integration systematically biases interactome mapping
MA Skinnider, RG Stacey, LJ Foster
PLoS computational biology 14 (10), e1006474, 2018
DeepRiPP integrates multiomics data to automate discovery of novel ribosomally synthesized natural products
NJ Merwin, WK Mousa, CA Dejong, MA Skinnider, MJ Cannon, H Li, ...
Proceedings of the National Academy of Sciences 117 (1), 371-380, 2020
Global analysis of prokaryotic tRNA-derived cyclodipeptide biosynthesis
MA Skinnider, CW Johnston, NJ Merwin, CA Dejong, NA Magarvey
BMC Genomics 19 (1), 45, 2018
A Targeted Proteomics Analysis of Cerebrospinal Fluid after Acute Human Spinal Cord Injury
F Streijger, MA Skinnider, JC Rogalski, R Balshaw, CP Shannon, ...
Journal of Neurotrauma 34 (12), 2054-2068, 2017
Predictors of sustained research involvement among MD/PhD programme graduates
MA Skinnider, DDW Twa, JW Squair, ND Rosenblum, CD Lukac, ...
Medical education 52 (5), 536-545, 2018
Comparative analysis of chemical similarity methods for modular natural products with a hypothetical structure enumeration algorithm
MA Skinnider, CA Dejong, BC Franczak, PD McNicholas, NA Magarvey
Journal of Cheminformatics 9 (1), 46, 2017
Statistical reanalysis of natural products reveals increasing chemical diversity
MA Skinnider, NA Magarvey
Proceedings of the National Academy of Sciences 114 (31), E6271-E6272, 2017
Automated Identification of Depsipeptide Natural Products by an Informatic Search Algorithm
MA Skinnider, CW Johnston, R Zvanych, NA Magarvey
ChemBioChem 16 (2), 223-227, 2015
Characteristics and outcomes of Canadian MD/PhD program graduates: a cross-sectional survey
MA Skinnider, JW Squair, DDW Twa, JX Ji, A Kuzyk, X Wang, ...
CMAJ open 5 (2), E308-E314, 2017
Exploration of Nonribosomal Peptide Families with an Automated Informatic Search Algorithm
L Yang, A Ibrahim, CW Johnston, MA Skinnider, B Ma, NA Magarvey
Chemistry & Biology 22 (9), 1259-1269, 2015
Informatic search strategies to discover analogues and variants of natural product archetypes
CW Johnston, AD Connaty, MA Skinnider, Y Li, A Grunwald, MA Wyatt, ...
Journal of industrial microbiology & biotechnology 43 (2-3), 293-298, 2016
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