| PRISM 3: expanded prediction of natural product chemical structures from microbial genomes MA Skinnider, NJ Merwin, CW Johnston, NA Magarvey Nucleic acids research 45 (W1), W49-W54, 2017 | 280 | 2017 |
| Genomes to natural products Prediction informatics for secondary metabolomes (PRISM) MA Skinnider, CA Dejong, PN Rees, CW Johnston, H Li, ALH Webster, ... Nucleic acids research 43 (20), 9645-9662, 2015 | 274 | 2015 |
| Confronting false discoveries in single-cell differential expression JW Squair, M Gautier, C Kathe, MA Anderson, ND James, TH Hutson, ... Nature Communications 12, 5692, 2021 | 201 | 2021 |
| Genomic charting of ribosomally synthesized natural product chemical space facilitates targeted mining MA Skinnider*, CW Johnston*, RE Edgar, CA Dejong, NJ Merwin, ... Proceedings of the National Academy of Sciences 113 (42), E6343-E6351, 2016 | 151 | 2016 |
| Polyketide and nonribosomal peptide retro-biosynthesis and global gene cluster matching CA Dejong*, GM Chen*, H Li*, CW Johnston, MR Edwards, PN Rees, ... Nature chemical biology 12 (12), 1007-1014, 2016 | 140 | 2016 |
| Comprehensive prediction of secondary metabolite structure and biological activity from microbial genome sequences MA Skinnider, CW Johnston, M Gunabalasingam, NJ Merwin, ... Nature Communications 11 (1), 1-9, 2020 | 136 | 2020 |
| An automated Genomes-to-Natural Products platform (GNP) for the discovery of modular natural products CW Johnston*, MA Skinnider*, MA Wyatt, X Li, MRM Ranieri, L Yang, ... Nature communications 6, 8421, 2015 | 126 | 2015 |
| Assembly and clustering of natural antibiotics guides target identification CW Johnston, MA Skinnider, CA Dejong, PN Rees, GM Chen, CG Walker, ... Nature chemical biology 12 (4), 233-239, 2016 | 98 | 2016 |
| Evaluating measures of association for single-cell transcriptomics MA Skinnider, JW Squair, LJ Foster Nature methods 16 (5), 381-386, 2019 | 88 | 2019 |
| DeepRiPP integrates multiomics data to automate discovery of novel ribosomally synthesized natural products NJ Merwin*, WK Mousa*, CA Dejong, MA Skinnider, MJ Cannon, H Li, ... Proceedings of the National Academy of Sciences 117 (1), 371-380, 2020 | 77 | 2020 |
| Cell type prioritization in single-cell data MA Skinnider*, JW Squair*, C Kathe, MA Anderson, M Gautier, ... Nature Biotechnology 39 (1), 30-34, 2021 | 68 | 2021 |
| An atlas of protein-protein interactions across mouse tissues MA Skinnider*, NE Scott*, A Prudova, CH Kerr, N Stoynov, RG Stacey, ... Cell, 2021 | 57* | 2021 |
| A rapid and accurate approach for prediction of interactomes from co-elution data (PrInCE) RG Stacey, MA Skinnider, NE Scott, LJ Foster BMC Bioinformatics 18 (1), 457, 2017 | 51 | 2017 |
| Chemical language models enable navigation in sparsely populated chemical space MA Skinnider, RG Stacey, DS Wishart, LJ Foster Nature Machine Intelligence 3 (9), 759-770, 2021 | 43 | 2021 |
| Comparative analysis of chemical similarity methods for modular natural products with a hypothetical structure enumeration algorithm MA Skinnider, CA Dejong, BC Franczak, PD McNicholas, NA Magarvey Journal of Cheminformatics 9 (1), 46, 2017 | 35 | 2017 |
| Genomic data integration systematically biases interactome mapping MA Skinnider, RG Stacey, LJ Foster PLoS computational biology 14 (10), e1006474, 2018 | 32 | 2018 |
| Global analysis of prokaryotic tRNA-derived cyclodipeptide biosynthesis MA Skinnider, CW Johnston, NJ Merwin, CA Dejong, NA Magarvey BMC Genomics 19 (1), 45, 2018 | 31 | 2018 |
| A Targeted Proteomics Analysis of Cerebrospinal Fluid after Acute Human Spinal Cord Injury F Streijger, MA Skinnider, JC Rogalski, R Balshaw, CP Shannon, ... Journal of Neurotrauma 34 (12), 2054-2068, 2017 | 30 | 2017 |
| Meta-analysis defines principles for the design and analysis of co-fractionation mass spectrometry experiments MA Skinnider, LJ Foster Nature Methods 18 (7), 806-815, 2021 | 26 | 2021 |
| Dynamic rewiring of the human interactome by interferon signaling CH Kerr*, MA Skinnider*, DDT Andrews, AM Madero, QWT Chan, ... Genome Biology 21 (1), 1-36, 2020 | 26 | 2020 |
