Alan M Moses
TitleCited byYear
Population genomics of domestic and wild yeasts
G Liti, DM Carter, AM Moses, J Warringer, L Parts, SA James, RP Davey, ...
Nature 458 (7236), 337, 2009
In vivo enhancer analysis of human conserved non-coding sequences
LA Pennacchio, N Ahituv, AM Moses, S Prabhakar, MA Nobrega, ...
Nature 444 (7118), 499, 2006
Widespread discordance of gene trees with species tree in Drosophila: evidence for incomplete lineage sorting
DA Pollard, VN Iyer, AM Moses, MB Eisen
PLoS genetics 2 (10), e173, 2006
NLStradamus: a simple Hidden Markov Model for nuclear localization signal prediction
ANN Ba, A Pogoutse, N Provart, AM Moses
BMC bioinformatics 10 (1), 202, 2009
TreeFam: 2008 update
J Ruan, H Li, Z Chen, A Coghlan, LJM Coin, Y Guo, JK Heriche, Y Hu, ...
Nucleic acids research 36 (suppl_1), D735-D740, 2007
Large-scale turnover of functional transcription factor binding sites in Drosophila
AM Moses, DA Pollard, DA Nix, VN Iyer, XY Li, MD Biggin, MB Eisen
PLoS computational biology 2 (10), e130, 2006
Trait variation in yeast is defined by population history
J Warringer, E Zörgö, FA Cubillos, A Zia, A Gjuvsland, JT Simpson, ...
PLoS genetics 7 (6), e1002111, 2011
Conservation and evolution of cis-regulatory systems in ascomycete fungi
AP Gasch, AM Moses, DY Chiang, HB Fraser, M Berardini, MB Eisen
PLoS biology 2 (12), e398, 2004
An atlas of over 90,000 conserved noncoding sequences provides insight into crucifer regulatory regions
A Haudry, AE Platts, E Vello, DR Hoen, M Leclercq, RJ Williamson, ...
Nature genetics 45 (8), 891, 2013
Revealing the genetic structure of a trait by sequencing a population under selection
L Parts, FA Cubillos, J Warringer, K Jain, F Salinas, SJ Bumpstead, ...
Genome research 21 (7), 1131-1138, 2011
A high-definition view of functional genetic variation from natural yeast genomes
A Bergström, JT Simpson, F Salinas, B Barré, L Parts, A Zia, ...
Molecular biology and evolution 31 (4), 872-888, 2014
MONKEY: identifying conserved transcription-factor binding sites in multiple alignments using a binding site-specific evolutionary model
AM Moses, DY Chiang, DA Pollard, VN Iyer, MB Eisen
Genome biology 5 (12), R98, 2004
Position specific variation in the rate of evolution in transcription factor binding sites
AM Moses, DY Chiang, M Kellis, ES Lander, MB Eisen
BMC evolutionary biology 3 (1), 19, 2003
Yeast proteome dynamics from single cell imaging and automated analysis
YT Chong, JLY Koh, H Friesen, SK Duffy, MJ Cox, A Moses, J Moffat, ...
Cell 161 (6), 1413-1424, 2015
Evidence for widespread adaptive evolution of gene expression in budding yeast
HB Fraser, AM Moses, EE Schadt
Proceedings of the National Academy of Sciences 107 (7), 2977-2982, 2010
Phylogenetic motif detection by expectation-maximization on evolutionary mixtures
AM Moses, DY Chiang, MB Eisen
Biocomputing 2004, 324-335, 2003
Proteome-wide discovery of evolutionary conserved sequences in disordered regions
ANN Ba, BJ Yeh, D Van Dyk, AR Davidson, BJ Andrews, EL Weiss, ...
Sci. Signal. 5 (215), rs1-rs1, 2012
Clustering of phosphorylation site recognition motifs can be exploited to predict the targets of cyclin-dependent kinase
AM Moses, JK Hériché, R Durbin
Genome biology 8 (2), R23, 2007
A mesoscale abscisic acid hormone interactome reveals a dynamic signaling landscape in Arabidopsis
S Lumba, S Toh, LF Handfield, M Swan, R Liu, JY Youn, SR Cutler, ...
Developmental Cell 29 (3), 360-372, 2014
Short linear motifs – ex nihilo evolution of protein regulation
NE Davey, MS Cyert, AM Moses
Cell Communication and Signaling 13 (1), 43, 2015
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