| Prediction of novel long non-coding RNAs based on RNA-Seq data of mouse Klf1 knockout study L Sun, Z Zhang, TL Bailey, AC Perkins, MR Tallack, Z Xu, H Liu BMC bioinformatics 13 (1), 331, 2012 | 135 | 2012 |
| Positive selection for elevated gene expression noise in yeast Z Zhang, W Qian, J Zhang Molecular systems biology 5 (1), 2009 | 126 | 2009 |
| NPInter: the noncoding RNAs and protein related biomacromolecules interaction database T Wu, J Wang, C Liu, Y Zhang, B Shi, X Zhu, Z Zhang, G Skogerbø, ... Nucleic acids research 34 (suppl_1), D150-D152, 2006 | 111 | 2006 |
| Decoding topologically associating domains with ultra-low resolution Hi-C data by graph structural entropy A Li, X Yin, B Xu, D Wang, J Han, Y Wei, Y Deng, Y Xiong, Z Zhang Nature communications 9 (1), 3265, 2018 | 83 | 2018 |
| Evolution and migration history of the Chinese population inferred from Chinese Y-chromosome evidence W Deng, B Shi, X He, Z Zhang, J Xu, B Li, J Yang, L Ling, C Dai, B Qiang, ... Journal of human genetics 49 (7), 339-348, 2004 | 77 | 2004 |
| A highly efficient and effective motif discovery method for ChIP-seq/ChIP-chip data using positional information X Ma, A Kulkarni, Z Zhang, Z Xuan, R Serfling, MQ Zhang Nucleic acids research 40 (7), e50-e50, 2012 | 54 | 2012 |
| A big world inside small-world networks Z Zhang, J Zhang PloS one 4 (5), e5686, 2009 | 54 | 2009 |
| Conservation analysis of small RNA genes in Escherichia coli Y Zhang, Z Zhang, L Ling, B Shi, R Chen Bioinformatics 20 (5), 599-603, 2004 | 54 | 2004 |
| Profiling Caenorhabditis elegans non-coding RNA expression with a combined microarray H He, L Cai, G Skogerbø, W Deng, T Liu, X Zhu, Y Wang, D Jia, Z Zhang, ... Nucleic acids research 34 (10), 2976-2983, 2006 | 48 | 2006 |
| Translational selection in human: more pronounced in housekeeping genes L Ma, P Cui, J Zhu, Z Zhang, Z Zhang Biology direct 9 (1), 17, 2014 | 45 | 2014 |
| Histone modification profiles are predictive for tissue/cell-type specific expression of both protein-coding and microRNA genes Z Zhang, MQ Zhang BMC bioinformatics 12 (1), 155, 2011 | 44 | 2011 |
| Phylophenetic properties of metabolic pathway topologies as revealed by global analysis Y Zhang, S Li, G Skogerbø, Z Zhang, X Zhu, Z Zhang, S Sun, H Lu, B Shi, ... BMC bioinformatics 7 (1), 252, 2006 | 43 | 2006 |
| Integrated analysis of multiple data sources reveals modular structure of biological networks H Lu, B Shi, G Wu, Y Zhang, X Zhu, Z Zhang, C Liu, Y Zhao, T Wu, J Wang, ... Biochemical and biophysical research communications 345 (1), 302-309, 2006 | 42 | 2006 |
| Identifying Hfq-binding small RNA targets in Escherichia coli Y Zhang, S Sun, T Wu, J Wang, C Liu, L Chen, X Zhu, Y Zhao, Z Zhang, ... Biochemical and biophysical research communications 343 (3), 950-955, 2006 | 32 | 2006 |
| Comparative 3D genome architecture in vertebrates D Li, M He, Q Tang, S Tian, J Zhang, Y Li, D Wang, L Jin, C Ning, W Zhu, ... BMC biology 20 (1), 1-21, 2022 | 23 | 2022 |
| Computational identification of active enhancers in model organisms C Wang, MQ Zhang, Z Zhang Genomics, proteomics & bioinformatics 11 (3), 142-150, 2013 | 23 | 2013 |
| DeTOKI identifies and characterizes the dynamics of chromatin TAD-like domains in a single cell X Li, G Zeng, A Li, Z Zhang Genome biology 22 (1), 1-26, 2021 | 21 | 2021 |
| Delta: a new web-based 3D genome visualization and analysis platform B Tang, F Li, J Li, W Zhao, Z Zhang Bioinformatics 34 (8), 1409-1410, 2018 | 19 | 2018 |
| Delta: a new web-based 3D genome visualization and analysis platform B Tang, F Li, J Li, W Zhao, Z Zhang Bioinformatics 34 (8), 1409-1410, 2018 | 19 | 2018 |
| Characteristic arrangement of nucleosomes is predictive of chromatin interactions at kilobase resolution H Zhang, F Li, Y Jia, B Xu, Y Zhang, X Li, Z Zhang Nucleic acids research 45 (22), 12739-12751, 2017 | 19 | 2017 |
