| Predicting the sequence specificities of DNA-and RNA-binding proteins by deep learning B Alipanahi, A Delong, MT Weirauch, BJ Frey Nature biotechnology 33 (8), 831, 2015 | 929 | 2015 |
| The human splicing code reveals new insights into the genetic determinants of disease HY Xiong, B Alipanahi, LJ Lee, H Bretschneider, D Merico, RKC Yuen, ... Science 347 (6218), 1254806, 2015 | 631 | 2015 |
| Widespread intron retention in mammals functionally tunes transcriptomes U Braunschweig, NL Barbosa-Morais, Q Pan, EN Nachman, B Alipanahi, ... Genome research 24 (11), 1774-1786, 2014 | 296 | 2014 |
| MBNL proteins repress ES-cell-specific alternative splicing and reprogramming H Han, M Irimia, PJ Ross, HK Sung, B Alipanahi, L David, A Golipour, ... Nature 498 (7453), 241, 2013 | 223 | 2013 |
| Whole-genome sequencing expands diagnostic utility and improves clinical management in paediatric medicine DJ Stavropoulos, D Merico, R Jobling, S Bowdin, N Monfared, ... NPJ genomic medicine 1, 15012, 2016 | 129 | 2016 |
| Brain-expressed exons under purifying selection are enriched for de novo mutations in autism spectrum disorder M Uddin, K Tammimies, G Pellecchia, B Alipanahi, P Hu, Z Wang, D Pinto, ... Nature genetics 46 (7), 742, 2014 | 111 | 2014 |
| Machine learning in genomic medicine: a review of computational problems and data sets MKK Leung, A Delong, B Alipanahi, BJ Frey Proceedings of the IEEE 104 (1), 176-197, 2015 | 99 | 2015 |
| Genome-wide characteristics of de novo mutations in autism RKC Yuen, D Merico, H Cao, G Pellecchia, B Alipanahi, ... NPJ genomic medicine 1, 16027, 2016 | 95 | 2016 |
| PICKY: a novel SVD-based NMR spectra peak picking method B Alipanahi, X Gao, E Karakoc, L Donaldson, M Li Bioinformatics 25 (12), i268-i275, 2009 | 69 | 2009 |
| Distance metric learning vs. Fisher discriminant analysis B Alipanahi, M Biggs, A Ghodsi Proceedings of the 23rd national conference on Artificial intelligence 2 …, 2008 | 59 | 2008 |
| Are random forests truly the best classifiers? M Wainberg, B Alipanahi, BJ Frey The Journal of Machine Learning Research 17 (1), 3837-3841, 2016 | 57 | 2016 |
| Identification of novel risk loci for restless legs syndrome in genome-wide association studies in individuals of European ancestry: a meta-analysis B Schormair, C Zhao, S Bell, E Tilch, AV Salminen, B Pütz, Y Dauvilliers, ... The Lancet Neurology 16 (11), 898-907, 2017 | 54 | 2017 |
| A genetic investigation of sex bias in the prevalence of attention-deficit/hyperactivity disorder J Martin, RK Walters, D Demontis, M Mattheisen, SH Lee, E Robinson, ... Biological psychiatry 83 (12), 1044-1053, 2018 | 37 | 2018 |
| Whole-genome sequencing suggests schizophrenia risk mechanisms in humans with 22q11. 2 deletion syndrome D Merico, M Zarrei, G Costain, L Ogura, B Alipanahi, MJ Gazzellone, ... G3: Genes, Genomes, Genetics 5 (11), 2453-2461, 2015 | 36 | 2015 |
| Determining protein structures from NOESY distance constraints by semidefinite programming B Alipanahi, N Krislock, A Ghodsi, H Wolkowicz, L Donaldson, M Li Journal of Computational Biology 20 (4), 296-310, 2013 | 32 | 2013 |
| Error tolerant NMR backbone resonance assignment and automated structure generation B Alipanahi, X Gao, E Karakoc, SC Li, F Balbach, G Feng, L Donaldson, ... Journal of bioinformatics and computational biology 9 (01), 15-41, 2011 | 26 | 2011 |
| Network cleanup B Alipanahi, BJ Frey Nature biotechnology 31 (8), 714, 2013 | 19 | 2013 |
| Guided locally linear embedding B Alipanahi, A Ghodsi Pattern Recognition Letters 32 (7), 1029-1035, 2011 | 18 | 2011 |
| Systems and methods for classifying, prioritizing and interpreting genetic variants and therapies using a deep neural network B Frey, MKK Leung, AT Delong, HY Xiong, B Alipanahi, LJ Lee, ... US Patent App. 14/739,432, 2016 | 16 | 2016 |
| Protein secondary structure prediction using NMR chemical shift data Y Zhao, B Alipanahi, SC Li, M Li Journal of bioinformatics and computational biology 8 (05), 867-884, 2010 | 16 | 2010 |
Brendan FreyFounder & CEO, Deep Genomics; Co-Founder, Vector Institute; Professor, University of TorontoVerified email at psi.toronto.edu